Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0560

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0559 and EX28DRAFT_0560 overlap by 1 nucleotidesEX28DRAFT_0560 and EX28DRAFT_0561 are separated by 496 nucleotidesEX28DRAFT_0561 and EX28DRAFT_0562 are separated by 47 nucleotides EX28DRAFT_0559: EX28DRAFT_0559 - Cation/multidrug efflux pump, at 552,938 to 556,000 _0559 EX28DRAFT_0560: EX28DRAFT_0560 - RND family efflux transporter, MFP subunit, at 556,000 to 556,986 _0560 EX28DRAFT_0561: EX28DRAFT_0561 - Universal stress protein UspA and related nucleotide-binding proteins, at 557,483 to 557,914 _0561 EX28DRAFT_0562: EX28DRAFT_0562 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 557,962 to 560,655 _0562 Position (kb) 555 556 557Strain fitness (log2 ratio) -2 -1 0 1 2at 555.044 kb on + strand, within EX28DRAFT_0559at 555.044 kb on + strand, within EX28DRAFT_0559at 555.045 kb on - strand, within EX28DRAFT_0559at 555.045 kb on - strand, within EX28DRAFT_0559at 555.045 kb on - strand, within EX28DRAFT_0559at 555.177 kb on + strand, within EX28DRAFT_0559at 555.177 kb on + strand, within EX28DRAFT_0559at 555.178 kb on - strand, within EX28DRAFT_0559at 555.178 kb on - strand, within EX28DRAFT_0559at 555.181 kb on + strand, within EX28DRAFT_0559at 555.182 kb on - strand, within EX28DRAFT_0559at 555.367 kb on + strand, within EX28DRAFT_0559at 555.368 kb on - strand, within EX28DRAFT_0559at 555.368 kb on - strand, within EX28DRAFT_0559at 555.504 kb on - strand, within EX28DRAFT_0559at 555.774 kb on + strandat 555.774 kb on + strandat 555.880 kb on + strandat 555.973 kb on + strandat 555.974 kb on - strandat 555.979 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.002 kb on - strandat 556.101 kb on + strand, within EX28DRAFT_0560at 556.286 kb on - strand, within EX28DRAFT_0560at 556.303 kb on - strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.351 kb on - strand, within EX28DRAFT_0560at 556.351 kb on - strand, within EX28DRAFT_0560at 556.351 kb on - strand, within EX28DRAFT_0560at 556.355 kb on - strand, within EX28DRAFT_0560at 556.356 kb on - strand, within EX28DRAFT_0560at 556.406 kb on + strand, within EX28DRAFT_0560at 556.407 kb on - strand, within EX28DRAFT_0560at 556.570 kb on + strand, within EX28DRAFT_0560at 556.571 kb on - strand, within EX28DRAFT_0560at 556.639 kb on + strand, within EX28DRAFT_0560at 556.640 kb on - strand, within EX28DRAFT_0560at 556.991 kb on - strandat 557.089 kb on - strandat 557.145 kb on + strandat 557.145 kb on + strandat 557.170 kb on + strandat 557.171 kb on - strandat 557.172 kb on + strandat 557.173 kb on - strandat 557.173 kb on - strandat 557.177 kb on - strandat 557.225 kb on - strandat 557.243 kb on + strandat 557.251 kb on - strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.255 kb on - strandat 557.255 kb on - strandat 557.255 kb on - strandat 557.255 kb on - strandat 557.289 kb on - strandat 557.289 kb on - strandat 557.296 kb on + strandat 557.375 kb on + strandat 557.482 kb on + strandat 557.483 kb on - strandat 557.516 kb on + strandat 557.666 kb on + strand, within EX28DRAFT_0561at 557.777 kb on - strand, within EX28DRAFT_0561

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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555,044 + EX28DRAFT_0559 0.69 +0.6
555,044 + EX28DRAFT_0559 0.69 -1.4
555,045 - EX28DRAFT_0559 0.69 +0.3
555,045 - EX28DRAFT_0559 0.69 -0.3
555,045 - EX28DRAFT_0559 0.69 +1.2
555,177 + EX28DRAFT_0559 0.73 -0.6
555,177 + EX28DRAFT_0559 0.73 -0.0
555,178 - EX28DRAFT_0559 0.73 +0.1
555,178 - EX28DRAFT_0559 0.73 +0.1
555,181 + EX28DRAFT_0559 0.73 -0.2
555,182 - EX28DRAFT_0559 0.73 -1.5
555,367 + EX28DRAFT_0559 0.79 +0.3
555,368 - EX28DRAFT_0559 0.79 +0.8
555,368 - EX28DRAFT_0559 0.79 -2.3
555,504 - EX28DRAFT_0559 0.84 -0.1
555,774 + +0.4
555,774 + -0.7
555,880 + -0.0
555,973 + +0.1
555,974 - +0.2
555,979 + -0.4
556,001 + +0.5
556,001 + +0.0
556,001 + +1.4
556,001 + +0.5
556,001 + +0.5
556,002 - -2.7
556,101 + EX28DRAFT_0560 0.10 -1.0
556,286 - EX28DRAFT_0560 0.29 +0.5
556,303 - EX28DRAFT_0560 0.31 +0.3
556,350 + EX28DRAFT_0560 0.35 +0.2
556,350 + EX28DRAFT_0560 0.35 -0.1
556,350 + EX28DRAFT_0560 0.35 +0.0
556,350 + EX28DRAFT_0560 0.35 +0.7
556,350 + EX28DRAFT_0560 0.35 +0.9
556,350 + EX28DRAFT_0560 0.35 -0.1
556,351 - EX28DRAFT_0560 0.36 -0.1
556,351 - EX28DRAFT_0560 0.36 +0.6
556,351 - EX28DRAFT_0560 0.36 +1.2
556,355 - EX28DRAFT_0560 0.36 -0.2
556,356 - EX28DRAFT_0560 0.36 -0.9
556,406 + EX28DRAFT_0560 0.41 +0.7
556,407 - EX28DRAFT_0560 0.41 +0.7
556,570 + EX28DRAFT_0560 0.58 -0.9
556,571 - EX28DRAFT_0560 0.58 +1.3
556,639 + EX28DRAFT_0560 0.65 +0.0
556,640 - EX28DRAFT_0560 0.65 +0.1
556,991 - -0.4
557,089 - -0.7
557,145 + -0.6
557,145 + -0.3
557,170 + +0.5
557,171 - +0.1
557,172 + +0.4
557,173 - +0.3
557,173 - +0.1
557,177 - +0.2
557,225 - +0.1
557,243 + -0.2
557,251 - +0.8
557,254 + -0.3
557,254 + -0.7
557,254 + +1.2
557,254 + -0.5
557,254 + -0.2
557,254 + -0.8
557,255 - +2.0
557,255 - +0.7
557,255 - -1.1
557,255 - +0.3
557,289 - +0.3
557,289 - +0.6
557,296 + -0.3
557,375 + +0.7
557,482 + -0.8
557,483 - +0.1
557,516 + +0.3
557,666 + EX28DRAFT_0561 0.42 -0.3
557,777 - EX28DRAFT_0561 0.68 -0.6

Or see this region's nucleotide sequence