Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0368

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0367 and EX28DRAFT_0368 are separated by 187 nucleotidesEX28DRAFT_0368 and EX28DRAFT_0369 are separated by 135 nucleotidesEX28DRAFT_0369 and EX28DRAFT_0370 are separated by 209 nucleotides EX28DRAFT_0367: EX28DRAFT_0367 - Sulfate permease and related transporters (MFS superfamily), at 338,481 to 339,770 _0367 EX28DRAFT_0368: EX28DRAFT_0368 - malate:quinone-oxidoreductase, at 339,958 to 341,607 _0368 EX28DRAFT_0369: EX28DRAFT_0369 - Serine protease inhibitor ecotin, at 341,743 to 342,246 _0369 EX28DRAFT_0370: EX28DRAFT_0370 - Protein of unknown function (DUF2534), at 342,456 to 342,716 _0370 Position (kb) 339 340 341 342Strain fitness (log2 ratio) -2 -1 0 1at 339.029 kb on + strand, within EX28DRAFT_0367at 339.030 kb on - strand, within EX28DRAFT_0367at 339.196 kb on + strand, within EX28DRAFT_0367at 339.341 kb on + strand, within EX28DRAFT_0367at 339.341 kb on + strand, within EX28DRAFT_0367at 339.422 kb on - strand, within EX28DRAFT_0367at 339.422 kb on - strand, within EX28DRAFT_0367at 339.422 kb on - strand, within EX28DRAFT_0367at 339.422 kb on - strand, within EX28DRAFT_0367at 339.426 kb on + strand, within EX28DRAFT_0367at 339.717 kb on - strandat 339.771 kb on - strandat 339.771 kb on - strandat 339.774 kb on - strandat 339.873 kb on + strandat 339.945 kb on + strandat 339.952 kb on + strandat 340.103 kb on - strandat 340.103 kb on - strandat 340.132 kb on - strand, within EX28DRAFT_0368at 340.132 kb on - strand, within EX28DRAFT_0368at 340.132 kb on - strand, within EX28DRAFT_0368at 340.228 kb on + strand, within EX28DRAFT_0368at 340.228 kb on + strand, within EX28DRAFT_0368at 340.229 kb on - strand, within EX28DRAFT_0368at 340.231 kb on - strand, within EX28DRAFT_0368at 340.231 kb on - strand, within EX28DRAFT_0368at 340.258 kb on - strand, within EX28DRAFT_0368at 340.260 kb on + strand, within EX28DRAFT_0368at 340.261 kb on - strand, within EX28DRAFT_0368at 340.468 kb on + strand, within EX28DRAFT_0368at 340.575 kb on + strand, within EX28DRAFT_0368at 340.579 kb on + strand, within EX28DRAFT_0368at 340.897 kb on + strand, within EX28DRAFT_0368at 340.954 kb on - strand, within EX28DRAFT_0368at 341.062 kb on - strand, within EX28DRAFT_0368at 341.094 kb on + strand, within EX28DRAFT_0368at 341.113 kb on + strand, within EX28DRAFT_0368at 341.170 kb on + strand, within EX28DRAFT_0368at 341.170 kb on + strand, within EX28DRAFT_0368at 341.173 kb on + strand, within EX28DRAFT_0368at 341.301 kb on + strand, within EX28DRAFT_0368at 341.382 kb on + strand, within EX28DRAFT_0368at 341.518 kb on + strandat 341.518 kb on + strandat 341.519 kb on - strandat 341.749 kb on + strandat 341.750 kb on - strandat 341.819 kb on + strand, within EX28DRAFT_0369at 341.820 kb on - strand, within EX28DRAFT_0369at 341.820 kb on - strand, within EX28DRAFT_0369at 341.820 kb on - strand, within EX28DRAFT_0369at 341.846 kb on + strand, within EX28DRAFT_0369at 341.874 kb on - strand, within EX28DRAFT_0369at 341.958 kb on - strand, within EX28DRAFT_0369at 342.063 kb on + strand, within EX28DRAFT_0369at 342.258 kb on + strandat 342.259 kb on - strandat 342.316 kb on - strandat 342.421 kb on + strandat 342.421 kb on + strandat 342.421 kb on + strandat 342.422 kb on - strandat 342.423 kb on + strandat 342.425 kb on + strandat 342.425 kb on + strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.431 kb on + strandat 342.432 kb on - strandat 342.518 kb on - strand, within EX28DRAFT_0370at 342.521 kb on + strand, within EX28DRAFT_0370at 342.521 kb on + strand, within EX28DRAFT_0370at 342.576 kb on + strand, within EX28DRAFT_0370at 342.576 kb on + strand, within EX28DRAFT_0370at 342.577 kb on - strand, within EX28DRAFT_0370at 342.577 kb on - strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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339,029 + EX28DRAFT_0367 0.42 -0.1
339,030 - EX28DRAFT_0367 0.43 -1.3
339,196 + EX28DRAFT_0367 0.55 +0.2
339,341 + EX28DRAFT_0367 0.67 +0.4
339,341 + EX28DRAFT_0367 0.67 +0.1
339,422 - EX28DRAFT_0367 0.73 +0.8
339,422 - EX28DRAFT_0367 0.73 -0.4
339,422 - EX28DRAFT_0367 0.73 +0.5
339,422 - EX28DRAFT_0367 0.73 -0.1
339,426 + EX28DRAFT_0367 0.73 +0.2
339,717 - +0.2
339,771 - -0.1
339,771 - +0.6
339,774 - -0.2
339,873 + +1.2
339,945 + +0.1
339,952 + -0.9
340,103 - +0.2
340,103 - +0.3
340,132 - EX28DRAFT_0368 0.11 +0.3
340,132 - EX28DRAFT_0368 0.11 +0.3
340,132 - EX28DRAFT_0368 0.11 +0.0
340,228 + EX28DRAFT_0368 0.16 +0.1
340,228 + EX28DRAFT_0368 0.16 -0.2
340,229 - EX28DRAFT_0368 0.16 -0.8
340,231 - EX28DRAFT_0368 0.17 -0.1
340,231 - EX28DRAFT_0368 0.17 -0.3
340,258 - EX28DRAFT_0368 0.18 +0.4
340,260 + EX28DRAFT_0368 0.18 -0.7
340,261 - EX28DRAFT_0368 0.18 +0.1
340,468 + EX28DRAFT_0368 0.31 -0.1
340,575 + EX28DRAFT_0368 0.37 -0.3
340,579 + EX28DRAFT_0368 0.38 +0.5
340,897 + EX28DRAFT_0368 0.57 -0.3
340,954 - EX28DRAFT_0368 0.60 +0.6
341,062 - EX28DRAFT_0368 0.67 +0.0
341,094 + EX28DRAFT_0368 0.69 +0.2
341,113 + EX28DRAFT_0368 0.70 -0.2
341,170 + EX28DRAFT_0368 0.73 +0.1
341,170 + EX28DRAFT_0368 0.73 +0.6
341,173 + EX28DRAFT_0368 0.74 +0.5
341,301 + EX28DRAFT_0368 0.81 -1.8
341,382 + EX28DRAFT_0368 0.86 +1.5
341,518 + -0.5
341,518 + +1.2
341,519 - +1.1
341,749 + +0.1
341,750 - -2.2
341,819 + EX28DRAFT_0369 0.15 -0.8
341,820 - EX28DRAFT_0369 0.15 -0.1
341,820 - EX28DRAFT_0369 0.15 +0.1
341,820 - EX28DRAFT_0369 0.15 +0.4
341,846 + EX28DRAFT_0369 0.20 -0.8
341,874 - EX28DRAFT_0369 0.26 +0.2
341,958 - EX28DRAFT_0369 0.43 +0.2
342,063 + EX28DRAFT_0369 0.63 +0.3
342,258 + -0.1
342,259 - +0.8
342,316 - -0.6
342,421 + +0.5
342,421 + +0.5
342,421 + +0.3
342,422 - +1.1
342,423 + -0.7
342,425 + -0.4
342,425 + -0.2
342,426 - -0.8
342,426 - -0.2
342,426 - +0.8
342,426 - +0.0
342,431 + -0.4
342,432 - +0.3
342,518 - EX28DRAFT_0370 0.24 -0.6
342,521 + EX28DRAFT_0370 0.25 +0.1
342,521 + EX28DRAFT_0370 0.25 -0.5
342,576 + EX28DRAFT_0370 0.46 +0.4
342,576 + EX28DRAFT_0370 0.46 -0.1
342,577 - EX28DRAFT_0370 0.46 +0.4
342,577 - EX28DRAFT_0370 0.46 -0.3
342,581 + EX28DRAFT_0370 0.48 -0.8
342,581 + EX28DRAFT_0370 0.48 -0.1
342,581 + EX28DRAFT_0370 0.48 -0.2

Or see this region's nucleotide sequence