Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21665

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21655 and CA264_21660 are separated by 11 nucleotidesCA264_21660 and CA264_21665 are separated by 102 nucleotides CA264_21655: CA264_21655 - MBL fold hydrolase, at 199,832 to 201,199 _21655 CA264_21660: CA264_21660 - ATPase, at 201,211 to 202,068 _21660 CA264_21665: CA264_21665 - 2-hydroxyacid dehydrogenase, at 202,171 to 203,169 _21665 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1at 201.179 kb on + strandat 201.179 kb on + strandat 201.185 kb on + strandat 201.186 kb on - strandat 201.200 kb on - strandat 201.213 kb on - strandat 201.237 kb on + strandat 201.241 kb on + strandat 201.241 kb on + strandat 201.242 kb on - strandat 201.242 kb on - strandat 201.322 kb on + strand, within CA264_21660at 201.322 kb on + strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.337 kb on + strand, within CA264_21660at 201.378 kb on + strand, within CA264_21660at 201.406 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.434 kb on - strand, within CA264_21660at 201.453 kb on - strand, within CA264_21660at 201.472 kb on + strand, within CA264_21660at 201.486 kb on + strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.565 kb on + strand, within CA264_21660at 201.571 kb on + strand, within CA264_21660at 201.572 kb on - strand, within CA264_21660at 201.611 kb on + strand, within CA264_21660at 201.612 kb on - strand, within CA264_21660at 201.667 kb on + strand, within CA264_21660at 201.672 kb on + strand, within CA264_21660at 201.768 kb on - strand, within CA264_21660at 201.817 kb on + strand, within CA264_21660at 201.839 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.913 kb on - strand, within CA264_21660at 202.048 kb on + strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.050 kb on + strandat 202.052 kb on + strandat 202.052 kb on + strandat 202.056 kb on + strandat 202.057 kb on - strandat 202.085 kb on + strandat 202.145 kb on + strandat 202.146 kb on - strandat 202.167 kb on - strandat 202.172 kb on + strandat 202.173 kb on - strandat 202.232 kb on + strandat 202.232 kb on + strandat 202.293 kb on + strand, within CA264_21665at 202.293 kb on + strand, within CA264_21665at 202.296 kb on + strand, within CA264_21665at 202.296 kb on + strand, within CA264_21665at 202.297 kb on - strand, within CA264_21665at 202.330 kb on + strand, within CA264_21665at 202.331 kb on - strand, within CA264_21665at 202.331 kb on - strand, within CA264_21665at 202.391 kb on + strand, within CA264_21665at 202.399 kb on + strand, within CA264_21665at 202.406 kb on - strand, within CA264_21665at 202.608 kb on - strand, within CA264_21665at 202.637 kb on + strand, within CA264_21665at 202.699 kb on + strand, within CA264_21665at 202.700 kb on - strand, within CA264_21665at 202.704 kb on + strand, within CA264_21665at 202.704 kb on + strand, within CA264_21665at 202.709 kb on - strand, within CA264_21665at 202.717 kb on + strand, within CA264_21665at 202.727 kb on - strand, within CA264_21665at 202.749 kb on + strand, within CA264_21665at 202.771 kb on + strand, within CA264_21665at 202.771 kb on + strand, within CA264_21665at 202.782 kb on + strand, within CA264_21665at 202.800 kb on + strand, within CA264_21665at 202.800 kb on + strand, within CA264_21665at 202.858 kb on + strand, within CA264_21665at 202.866 kb on - strand, within CA264_21665at 202.874 kb on + strand, within CA264_21665at 202.874 kb on + strand, within CA264_21665at 202.875 kb on - strand, within CA264_21665at 203.025 kb on + strand, within CA264_21665at 203.025 kb on + strand, within CA264_21665at 203.026 kb on - strand, within CA264_21665at 203.026 kb on - strand, within CA264_21665at 203.142 kb on + strandat 203.142 kb on + strandat 203.142 kb on + strandat 203.143 kb on - strandat 203.143 kb on - strandat 203.143 kb on - strandat 203.148 kb on + strandat 203.149 kb on - strandat 203.154 kb on - strandat 203.154 kb on - strandat 203.154 kb on - strandat 203.154 kb on - strandat 203.169 kb on + strandat 203.179 kb on + strandat 203.179 kb on + strandat 203.180 kb on - strandat 203.184 kb on - strandat 203.211 kb on + strandat 203.242 kb on + strandat 203.272 kb on + strandat 203.361 kb on + strandat 203.366 kb on + strandat 203.402 kb on + strandat 203.403 kb on - strandat 203.416 kb on + strandat 203.442 kb on - strandat 203.446 kb on + strandat 203.446 kb on + strandat 203.447 kb on - strandat 203.447 kb on - strandat 203.450 kb on + strandat 203.450 kb on + strandat 203.451 kb on - strandat 203.451 kb on - strandat 203.461 kb on + strandat 203.461 kb on + strandat 203.462 kb on - strandat 203.464 kb on + strandat 203.465 kb on - strandat 203.591 kb on + strandat 203.597 kb on + strandat 203.635 kb on + strandat 203.648 kb on + strandat 203.648 kb on + strandat 203.649 kb on - strandat 203.659 kb on - strandat 203.685 kb on + strandat 203.685 kb on + strandat 203.685 kb on + strandat 203.686 kb on - strandat 203.879 kb on + strandat 203.933 kb on - strandat 203.935 kb on + strandat 203.935 kb on + strandat 203.936 kb on - strandat 203.940 kb on + strandat 203.940 kb on + strandat 203.941 kb on - strandat 203.946 kb on + strandat 204.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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201,179 + -0.3
201,179 + +0.2
201,185 + -0.4
201,186 - +0.2
201,200 - +0.5
201,213 - +0.1
201,237 + -0.2
201,241 + -0.6
201,241 + -0.9
201,242 - -0.3
201,242 - -0.2
201,322 + CA264_21660 0.13 +0.0
201,322 + CA264_21660 0.13 +1.5
201,323 - CA264_21660 0.13 +1.2
201,323 - CA264_21660 0.13 -0.7
201,323 - CA264_21660 0.13 -0.4
201,337 + CA264_21660 0.15 -2.2
201,378 + CA264_21660 0.19 +1.0
201,406 + CA264_21660 0.23 +0.6
201,433 + CA264_21660 0.26 +0.4
201,433 + CA264_21660 0.26 -1.6
201,433 + CA264_21660 0.26 -1.4
201,434 - CA264_21660 0.26 -0.3
201,453 - CA264_21660 0.28 -1.0
201,472 + CA264_21660 0.30 -0.7
201,486 + CA264_21660 0.32 -0.5
201,487 - CA264_21660 0.32 -0.1
201,487 - CA264_21660 0.32 +0.1
201,565 + CA264_21660 0.41 -0.3
201,571 + CA264_21660 0.42 +0.0
201,572 - CA264_21660 0.42 -1.1
201,611 + CA264_21660 0.47 -0.0
201,612 - CA264_21660 0.47 -0.4
201,667 + CA264_21660 0.53 -0.2
201,672 + CA264_21660 0.54 -0.7
201,768 - CA264_21660 0.65 +0.4
201,817 + CA264_21660 0.71 +1.1
201,839 - CA264_21660 0.73 -1.0
201,900 - CA264_21660 0.80 -0.3
201,900 - CA264_21660 0.80 +0.4
201,900 - CA264_21660 0.80 +1.0
201,913 - CA264_21660 0.82 -0.1
202,048 + -1.2
202,049 - -0.3
202,049 - -0.2
202,049 - -0.5
202,050 + -1.0
202,052 + +1.2
202,052 + -1.7
202,056 + -0.1
202,057 - -0.7
202,085 + -0.5
202,145 + -0.7
202,146 - -1.9
202,167 - -0.7
202,172 + -1.1
202,173 - +0.1
202,232 + -0.7
202,232 + -1.0
202,293 + CA264_21665 0.12 +0.6
202,293 + CA264_21665 0.12 -1.1
202,296 + CA264_21665 0.13 -0.7
202,296 + CA264_21665 0.13 -1.6
202,297 - CA264_21665 0.13 -0.3
202,330 + CA264_21665 0.16 -1.3
202,331 - CA264_21665 0.16 -1.0
202,331 - CA264_21665 0.16 -0.2
202,391 + CA264_21665 0.22 +0.2
202,399 + CA264_21665 0.23 -0.9
202,406 - CA264_21665 0.24 -1.2
202,608 - CA264_21665 0.44 -0.5
202,637 + CA264_21665 0.47 -0.6
202,699 + CA264_21665 0.53 -1.1
202,700 - CA264_21665 0.53 -1.4
202,704 + CA264_21665 0.53 -0.8
202,704 + CA264_21665 0.53 -0.9
202,709 - CA264_21665 0.54 -1.0
202,717 + CA264_21665 0.55 -0.8
202,727 - CA264_21665 0.56 +0.1
202,749 + CA264_21665 0.58 -1.7
202,771 + CA264_21665 0.60 -2.2
202,771 + CA264_21665 0.60 -0.5
202,782 + CA264_21665 0.61 -1.2
202,800 + CA264_21665 0.63 -1.6
202,800 + CA264_21665 0.63 -1.4
202,858 + CA264_21665 0.69 -1.0
202,866 - CA264_21665 0.70 -1.2
202,874 + CA264_21665 0.70 -1.9
202,874 + CA264_21665 0.70 -1.6
202,875 - CA264_21665 0.70 -0.9
203,025 + CA264_21665 0.85 -0.2
203,025 + CA264_21665 0.85 -1.5
203,026 - CA264_21665 0.86 -0.7
203,026 - CA264_21665 0.86 -1.6
203,142 + -0.3
203,142 + -0.8
203,142 + -0.1
203,143 - -0.7
203,143 - -1.6
203,143 - -0.9
203,148 + +1.5
203,149 - -0.6
203,154 - -0.3
203,154 - -1.0
203,154 - -1.0
203,154 - +0.4
203,169 + -1.0
203,179 + -0.7
203,179 + -2.1
203,180 - -1.0
203,184 - -0.1
203,211 + +0.3
203,242 + -0.7
203,272 + -1.6
203,361 + -0.6
203,366 + -1.5
203,402 + -0.8
203,403 - -2.0
203,416 + -1.2
203,442 - +0.4
203,446 + -2.0
203,446 + -1.1
203,447 - +0.1
203,447 - +0.9
203,450 + -0.9
203,450 + -1.3
203,451 - +0.8
203,451 - -0.1
203,461 + -0.2
203,461 + -0.7
203,462 - -0.2
203,464 + -0.2
203,465 - -1.0
203,591 + -0.2
203,597 + -0.7
203,635 + -1.1
203,648 + -0.3
203,648 + -0.1
203,649 - -0.5
203,659 - +0.9
203,685 + +0.1
203,685 + -0.7
203,685 + -0.9
203,686 - -0.9
203,879 + -0.2
203,933 - +0.1
203,935 + -1.1
203,935 + +1.3
203,936 - -0.9
203,940 + +0.6
203,940 + -0.6
203,941 - +0.2
203,946 + -0.4
204,019 - +0.3

Or see this region's nucleotide sequence