Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21335

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21330 and CA264_21335 are separated by 79 nucleotidesCA264_21335 and CA264_21340 are separated by 79 nucleotidesCA264_21340 and CA264_21345 are separated by 201 nucleotides CA264_21330: CA264_21330 - MBL fold metallo-hydrolase, at 130,050 to 131,405 _21330 CA264_21335: CA264_21335 - hypothetical protein, at 131,485 to 131,742 _21335 CA264_21340: CA264_21340 - hypothetical protein, at 131,822 to 132,412 _21340 CA264_21345: CA264_21345 - transcriptional regulator, at 132,614 to 132,946 _21345 Position (kb) 131 132Strain fitness (log2 ratio) -1 0 1 2 3at 130.540 kb on - strand, within CA264_21330at 130.548 kb on - strand, within CA264_21330at 130.583 kb on - strand, within CA264_21330at 130.654 kb on + strand, within CA264_21330at 130.678 kb on - strand, within CA264_21330at 130.717 kb on + strand, within CA264_21330at 130.718 kb on - strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.737 kb on + strand, within CA264_21330at 130.741 kb on + strand, within CA264_21330at 130.749 kb on + strand, within CA264_21330at 130.750 kb on - strand, within CA264_21330at 130.833 kb on + strand, within CA264_21330at 130.833 kb on + strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.834 kb on - strand, within CA264_21330at 130.964 kb on - strand, within CA264_21330at 130.964 kb on - strand, within CA264_21330at 130.984 kb on - strand, within CA264_21330at 131.346 kb on + strandat 131.353 kb on + strandat 131.354 kb on - strandat 131.415 kb on + strandat 131.420 kb on + strandat 131.427 kb on + strandat 131.430 kb on + strandat 131.431 kb on - strandat 131.431 kb on - strandat 131.432 kb on + strandat 131.433 kb on - strandat 131.433 kb on - strandat 131.490 kb on - strandat 131.588 kb on + strand, within CA264_21335at 131.589 kb on - strand, within CA264_21335at 131.620 kb on + strand, within CA264_21335at 131.773 kb on + strandat 131.815 kb on + strandat 131.884 kb on + strand, within CA264_21340at 131.889 kb on + strand, within CA264_21340at 131.889 kb on + strand, within CA264_21340at 131.891 kb on + strand, within CA264_21340at 131.892 kb on - strand, within CA264_21340at 131.897 kb on - strand, within CA264_21340at 131.903 kb on - strand, within CA264_21340at 131.903 kb on - strand, within CA264_21340at 131.908 kb on - strand, within CA264_21340at 131.914 kb on + strand, within CA264_21340at 131.914 kb on + strand, within CA264_21340at 131.915 kb on - strand, within CA264_21340at 131.915 kb on - strand, within CA264_21340at 132.047 kb on - strand, within CA264_21340at 132.047 kb on - strand, within CA264_21340at 132.118 kb on + strand, within CA264_21340at 132.131 kb on + strand, within CA264_21340at 132.132 kb on - strand, within CA264_21340at 132.132 kb on - strand, within CA264_21340at 132.206 kb on - strand, within CA264_21340at 132.298 kb on + strand, within CA264_21340at 132.406 kb on + strandat 132.411 kb on - strandat 132.419 kb on + strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.537 kb on - strandat 132.542 kb on + strandat 132.549 kb on - strandat 132.549 kb on - strandat 132.568 kb on - strandat 132.568 kb on - strandat 132.605 kb on - strandat 132.643 kb on + strandat 132.644 kb on - strandat 132.644 kb on - strandat 132.652 kb on - strand, within CA264_21345at 132.703 kb on - strand, within CA264_21345at 132.731 kb on - strand, within CA264_21345

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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130,540 - CA264_21330 0.36 +0.9
130,548 - CA264_21330 0.37 +0.0
130,583 - CA264_21330 0.39 +0.4
130,654 + CA264_21330 0.45 +0.1
130,678 - CA264_21330 0.46 +0.3
130,717 + CA264_21330 0.49 +1.0
130,718 - CA264_21330 0.49 +0.2
130,737 + CA264_21330 0.51 +2.2
130,737 + CA264_21330 0.51 +2.2
130,737 + CA264_21330 0.51 +1.6
130,737 + CA264_21330 0.51 +1.5
130,741 + CA264_21330 0.51 +0.7
130,749 + CA264_21330 0.52 -0.1
130,750 - CA264_21330 0.52 -0.0
130,833 + CA264_21330 0.58 +1.5
130,833 + CA264_21330 0.58 +0.6
130,834 - CA264_21330 0.58 +0.4
130,834 - CA264_21330 0.58 -0.3
130,834 - CA264_21330 0.58 +0.9
130,964 - CA264_21330 0.67 +0.7
130,964 - CA264_21330 0.67 +0.5
130,984 - CA264_21330 0.69 +1.1
131,346 + +0.9
131,353 + +0.8
131,354 - +1.2
131,415 + +1.2
131,420 + +0.6
131,427 + +1.6
131,430 + +1.5
131,431 - -0.3
131,431 - +0.0
131,432 + +1.0
131,433 - +0.5
131,433 - -0.4
131,490 - +2.5
131,588 + CA264_21335 0.40 +0.1
131,589 - CA264_21335 0.40 +0.8
131,620 + CA264_21335 0.52 +0.6
131,773 + +1.6
131,815 + +1.0
131,884 + CA264_21340 0.10 +1.9
131,889 + CA264_21340 0.11 +2.8
131,889 + CA264_21340 0.11 +1.1
131,891 + CA264_21340 0.12 +1.5
131,892 - CA264_21340 0.12 +0.3
131,897 - CA264_21340 0.13 +0.3
131,903 - CA264_21340 0.14 -1.2
131,903 - CA264_21340 0.14 -0.1
131,908 - CA264_21340 0.15 +0.5
131,914 + CA264_21340 0.16 +2.9
131,914 + CA264_21340 0.16 +0.9
131,915 - CA264_21340 0.16 -0.3
131,915 - CA264_21340 0.16 +0.1
132,047 - CA264_21340 0.38 -0.1
132,047 - CA264_21340 0.38 -0.1
132,118 + CA264_21340 0.50 +1.7
132,131 + CA264_21340 0.52 +0.4
132,132 - CA264_21340 0.52 -0.9
132,132 - CA264_21340 0.52 +1.0
132,206 - CA264_21340 0.65 +2.0
132,298 + CA264_21340 0.81 +1.3
132,406 + -1.2
132,411 - -0.5
132,419 + +0.6
132,420 - +1.2
132,420 - -0.5
132,420 - -0.1
132,420 - -0.3
132,420 - -0.0
132,537 - +1.0
132,542 + +0.2
132,549 - -0.0
132,549 - -0.1
132,568 - +1.7
132,568 - -0.4
132,605 - -0.7
132,643 + +0.1
132,644 - -0.3
132,644 - -0.8
132,652 - CA264_21345 0.11 -0.7
132,703 - CA264_21345 0.27 +0.1
132,731 - CA264_21345 0.35 -0.2

Or see this region's nucleotide sequence