Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21075

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21065 and CA264_21070 are separated by 39 nucleotidesCA264_21070 and CA264_21075 are separated by 124 nucleotidesCA264_21075 and CA264_21080 are separated by 160 nucleotides CA264_21065: CA264_21065 - transcriptional regulator, at 77,350 to 77,685 _21065 CA264_21070: CA264_21070 - transcriptional repressor, at 77,725 to 78,138 _21070 CA264_21075: CA264_21075 - ATP-binding protein, at 78,263 to 79,024 _21075 CA264_21080: CA264_21080 - heavy metal translocating P-type ATPase, at 79,185 to 81,212 _21080 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 77.302 kb on - strandat 77.326 kb on - strandat 77.327 kb on + strandat 77.370 kb on + strandat 77.397 kb on - strand, within CA264_21065at 77.573 kb on + strand, within CA264_21065at 77.573 kb on + strand, within CA264_21065at 77.621 kb on - strand, within CA264_21065at 77.621 kb on - strand, within CA264_21065at 77.709 kb on + strandat 77.717 kb on + strandat 77.718 kb on - strandat 77.826 kb on + strand, within CA264_21070at 77.876 kb on + strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.950 kb on + strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 78.060 kb on + strand, within CA264_21070at 78.061 kb on - strand, within CA264_21070at 78.061 kb on - strand, within CA264_21070at 78.062 kb on + strand, within CA264_21070at 78.063 kb on - strand, within CA264_21070at 78.063 kb on - strand, within CA264_21070at 78.095 kb on + strand, within CA264_21070at 78.095 kb on + strand, within CA264_21070at 78.136 kb on + strandat 78.137 kb on - strandat 78.137 kb on - strandat 78.145 kb on - strandat 78.181 kb on - strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.194 kb on - strandat 78.203 kb on + strandat 78.203 kb on + strandat 78.204 kb on - strandat 78.204 kb on - strandat 78.204 kb on - strandat 78.206 kb on - strandat 78.207 kb on + strandat 78.221 kb on - strandat 78.247 kb on + strandat 78.248 kb on - strandat 78.251 kb on + strandat 78.252 kb on - strandat 78.325 kb on - strandat 78.346 kb on - strand, within CA264_21075at 78.375 kb on + strand, within CA264_21075at 78.406 kb on + strand, within CA264_21075at 78.406 kb on + strand, within CA264_21075at 78.407 kb on - strand, within CA264_21075at 78.441 kb on - strand, within CA264_21075at 78.441 kb on - strand, within CA264_21075at 78.456 kb on + strand, within CA264_21075at 78.457 kb on - strand, within CA264_21075at 78.469 kb on - strand, within CA264_21075at 78.533 kb on + strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.534 kb on - strand, within CA264_21075at 78.633 kb on - strand, within CA264_21075at 78.792 kb on - strand, within CA264_21075at 78.820 kb on - strand, within CA264_21075at 78.820 kb on - strand, within CA264_21075at 78.827 kb on - strand, within CA264_21075at 78.840 kb on + strand, within CA264_21075at 78.840 kb on + strand, within CA264_21075at 78.841 kb on - strand, within CA264_21075at 78.841 kb on - strand, within CA264_21075at 78.841 kb on - strand, within CA264_21075at 78.865 kb on + strand, within CA264_21075at 78.877 kb on + strand, within CA264_21075at 78.951 kb on + strandat 78.967 kb on + strandat 79.003 kb on + strandat 79.004 kb on - strandat 79.004 kb on - strandat 79.020 kb on - strandat 79.054 kb on + strandat 79.054 kb on + strandat 79.076 kb on + strandat 79.076 kb on + strandat 79.077 kb on - strandat 79.077 kb on - strandat 79.077 kb on - strandat 79.077 kb on - strandat 79.078 kb on + strandat 79.078 kb on + strandat 79.079 kb on - strandat 79.079 kb on - strandat 79.079 kb on - strandat 79.081 kb on - strandat 79.081 kb on - strandat 79.081 kb on - strandat 79.081 kb on - strandat 79.083 kb on + strandat 79.083 kb on + strandat 79.083 kb on + strandat 79.084 kb on - strandat 79.084 kb on - strandat 79.118 kb on - strandat 79.166 kb on - strandat 79.180 kb on - strandat 79.202 kb on + strandat 79.215 kb on - strandat 79.216 kb on + strandat 79.217 kb on - strandat 79.217 kb on - strandat 79.230 kb on - strandat 79.282 kb on + strandat 79.283 kb on - strandat 79.385 kb on + strandat 79.399 kb on + strand, within CA264_21080at 79.482 kb on + strand, within CA264_21080at 79.536 kb on - strand, within CA264_21080at 79.536 kb on - strand, within CA264_21080at 79.544 kb on + strand, within CA264_21080at 79.545 kb on - strand, within CA264_21080at 79.600 kb on - strand, within CA264_21080at 79.739 kb on + strand, within CA264_21080at 79.741 kb on + strand, within CA264_21080at 79.762 kb on - strand, within CA264_21080at 79.999 kb on + strand, within CA264_21080at 80.000 kb on - strand, within CA264_21080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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77,302 - -2.2
77,326 - -0.5
77,327 + -0.9
77,370 + -1.1
77,397 - CA264_21065 0.14 -0.4
77,573 + CA264_21065 0.66 +1.7
77,573 + CA264_21065 0.66 -1.7
77,621 - CA264_21065 0.81 -2.8
77,621 - CA264_21065 0.81 -0.5
77,709 + -0.7
77,717 + -1.6
77,718 - -1.2
77,826 + CA264_21070 0.24 -2.0
77,876 + CA264_21070 0.36 -0.9
77,877 - CA264_21070 0.37 -0.6
77,877 - CA264_21070 0.37 -0.2
77,877 - CA264_21070 0.37 +0.5
77,916 - CA264_21070 0.46 -1.6
77,916 - CA264_21070 0.46 -1.0
77,916 - CA264_21070 0.46 -0.9
77,950 + CA264_21070 0.54 -1.6
77,951 - CA264_21070 0.55 -1.9
77,951 - CA264_21070 0.55 -2.1
77,951 - CA264_21070 0.55 -2.3
78,060 + CA264_21070 0.81 -2.2
78,061 - CA264_21070 0.81 -1.7
78,061 - CA264_21070 0.81 -0.5
78,062 + CA264_21070 0.81 -0.5
78,063 - CA264_21070 0.82 +0.4
78,063 - CA264_21070 0.82 -2.1
78,095 + CA264_21070 0.89 -3.2
78,095 + CA264_21070 0.89 -2.2
78,136 + -1.9
78,137 - -0.7
78,137 - +1.0
78,145 - -2.6
78,181 - +0.9
78,191 + -0.2
78,191 + -1.8
78,191 + -1.6
78,191 + -2.1
78,192 - -1.6
78,192 - -1.4
78,192 - -2.5
78,192 - -1.0
78,192 - -2.2
78,192 - -1.3
78,194 - -2.6
78,203 + -0.7
78,203 + -2.6
78,204 - -1.1
78,204 - -1.1
78,204 - -3.7
78,206 - -1.5
78,207 + -2.7
78,221 - -1.7
78,247 + -2.8
78,248 - +0.1
78,251 + -1.1
78,252 - -0.7
78,325 - -2.2
78,346 - CA264_21075 0.11 -1.6
78,375 + CA264_21075 0.15 -0.1
78,406 + CA264_21075 0.19 -1.2
78,406 + CA264_21075 0.19 -2.1
78,407 - CA264_21075 0.19 +0.1
78,441 - CA264_21075 0.23 +0.0
78,441 - CA264_21075 0.23 -0.5
78,456 + CA264_21075 0.25 -2.1
78,457 - CA264_21075 0.25 -2.2
78,469 - CA264_21075 0.27 +0.3
78,533 + CA264_21075 0.35 +1.1
78,534 - CA264_21075 0.36 -0.8
78,534 - CA264_21075 0.36 -1.9
78,534 - CA264_21075 0.36 -1.2
78,534 - CA264_21075 0.36 -1.2
78,633 - CA264_21075 0.49 -3.1
78,792 - CA264_21075 0.69 -2.2
78,820 - CA264_21075 0.73 -1.5
78,820 - CA264_21075 0.73 -0.2
78,827 - CA264_21075 0.74 -1.8
78,840 + CA264_21075 0.76 -0.9
78,840 + CA264_21075 0.76 -0.0
78,841 - CA264_21075 0.76 +0.0
78,841 - CA264_21075 0.76 -2.4
78,841 - CA264_21075 0.76 -1.6
78,865 + CA264_21075 0.79 -2.5
78,877 + CA264_21075 0.81 -0.9
78,951 + -1.3
78,967 + -0.8
79,003 + -2.6
79,004 - -1.5
79,004 - -1.6
79,020 - -0.5
79,054 + -0.0
79,054 + -0.9
79,076 + -1.7
79,076 + -2.3
79,077 - -1.4
79,077 - -0.0
79,077 - -1.3
79,077 - -1.6
79,078 + -0.8
79,078 + -1.5
79,079 - -1.6
79,079 - -1.5
79,079 - -1.6
79,081 - -1.1
79,081 - -1.2
79,081 - -2.6
79,081 - -0.2
79,083 + -2.6
79,083 + -0.1
79,083 + -2.5
79,084 - -1.0
79,084 - +0.3
79,118 - -2.9
79,166 - -0.1
79,180 - -0.5
79,202 + +0.4
79,215 - -0.3
79,216 + +0.0
79,217 - -0.7
79,217 - -0.9
79,230 - +2.9
79,282 + +0.3
79,283 - -1.6
79,385 + +0.7
79,399 + CA264_21080 0.11 +1.0
79,482 + CA264_21080 0.15 +0.7
79,536 - CA264_21080 0.17 +0.3
79,536 - CA264_21080 0.17 -1.8
79,544 + CA264_21080 0.18 -1.4
79,545 - CA264_21080 0.18 -0.6
79,600 - CA264_21080 0.20 -0.1
79,739 + CA264_21080 0.27 -0.0
79,741 + CA264_21080 0.27 +0.5
79,762 - CA264_21080 0.28 -0.1
79,999 + CA264_21080 0.40 +0.5
80,000 - CA264_21080 0.40 -0.6

Or see this region's nucleotide sequence