Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20955

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20945 and CA264_20950 are separated by 82 nucleotidesCA264_20950 and CA264_20955 are separated by 455 nucleotidesCA264_20955 and CA264_20960 are separated by 393 nucleotides CA264_20945: CA264_20945 - hypothetical protein, at 53,531 to 53,812 _20945 CA264_20950: CA264_20950 - hypothetical protein, at 53,895 to 54,149 _20950 CA264_20955: CA264_20955 - hypothetical protein, at 54,605 to 55,042 _20955 CA264_20960: CA264_20960 - hypothetical protein, at 55,436 to 57,013 _20960 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.633 kb on - strand, within CA264_20945at 53.633 kb on - strand, within CA264_20945at 53.710 kb on - strand, within CA264_20945at 53.845 kb on - strandat 53.845 kb on - strandat 53.868 kb on - strandat 53.903 kb on - strandat 53.903 kb on - strandat 53.916 kb on - strandat 53.995 kb on - strand, within CA264_20950at 54.013 kb on - strand, within CA264_20950at 54.054 kb on - strand, within CA264_20950at 54.057 kb on - strand, within CA264_20950

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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53,633 - CA264_20945 0.36 -1.9
53,633 - CA264_20945 0.36 -0.0
53,710 - CA264_20945 0.63 +0.9
53,845 - -2.2
53,845 - +0.5
53,868 - -0.1
53,903 - -0.5
53,903 - +0.7
53,916 - -0.3
53,995 - CA264_20950 0.39 -0.3
54,013 - CA264_20950 0.46 +0.5
54,054 - CA264_20950 0.62 +1.0
54,057 - CA264_20950 0.64 +0.5

Or see this region's nucleotide sequence