Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20125

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20115 and CA264_20120 are separated by 75 nucleotidesCA264_20120 and CA264_20125 are separated by 447 nucleotidesCA264_20125 and CA264_20130 are separated by 111 nucleotides CA264_20115: CA264_20115 - phosphoribosylamine--glycine ligase, at 4,638,404 to 4,639,693 _20115 CA264_20120: CA264_20120 - hypothetical protein, at 4,639,769 to 4,640,182 _20120 CA264_20125: CA264_20125 - hypothetical protein, at 4,640,630 to 4,640,971 _20125 CA264_20130: CA264_20130 - hypothetical protein, at 4,641,083 to 4,641,619 _20130 Position (kb) 4640 4641Strain fitness (log2 ratio) -2 -1 0 1at 4639.631 kb on - strandat 4639.692 kb on - strandat 4639.709 kb on - strandat 4639.770 kb on + strandat 4639.770 kb on + strandat 4639.776 kb on + strandat 4639.962 kb on - strand, within CA264_20120at 4640.070 kb on - strand, within CA264_20120at 4640.088 kb on - strand, within CA264_20120at 4640.141 kb on - strandat 4640.167 kb on + strandat 4640.170 kb on - strandat 4640.178 kb on + strandat 4640.300 kb on + strandat 4640.300 kb on + strandat 4640.349 kb on - strandat 4640.380 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.385 kb on + strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.386 kb on - strandat 4640.388 kb on + strandat 4640.388 kb on + strandat 4640.503 kb on + strandat 4640.504 kb on - strandat 4640.542 kb on + strandat 4640.543 kb on - strandat 4640.577 kb on + strandat 4640.578 kb on - strandat 4640.578 kb on - strandat 4640.578 kb on - strandat 4640.601 kb on - strandat 4640.616 kb on - strandat 4640.629 kb on + strandat 4640.649 kb on - strandat 4640.653 kb on + strandat 4640.653 kb on + strandat 4640.654 kb on - strandat 4640.682 kb on + strand, within CA264_20125at 4640.693 kb on - strand, within CA264_20125at 4640.856 kb on - strand, within CA264_20125at 4640.884 kb on + strand, within CA264_20125at 4640.884 kb on + strand, within CA264_20125at 4640.885 kb on - strand, within CA264_20125at 4640.888 kb on - strand, within CA264_20125at 4640.969 kb on + strandat 4640.970 kb on - strandat 4640.986 kb on + strandat 4641.002 kb on + strandat 4641.002 kb on + strandat 4641.012 kb on + strandat 4641.013 kb on - strandat 4641.068 kb on - strandat 4641.138 kb on - strand, within CA264_20130at 4641.174 kb on - strand, within CA264_20130at 4641.182 kb on + strand, within CA264_20130at 4641.256 kb on + strand, within CA264_20130at 4641.269 kb on + strand, within CA264_20130at 4641.269 kb on + strand, within CA264_20130at 4641.280 kb on - strand, within CA264_20130at 4641.323 kb on + strand, within CA264_20130at 4641.324 kb on - strand, within CA264_20130at 4641.324 kb on - strand, within CA264_20130at 4641.325 kb on + strand, within CA264_20130at 4641.325 kb on + strand, within CA264_20130at 4641.329 kb on + strand, within CA264_20130at 4641.380 kb on + strand, within CA264_20130at 4641.396 kb on + strand, within CA264_20130at 4641.449 kb on + strand, within CA264_20130at 4641.449 kb on + strand, within CA264_20130at 4641.449 kb on + strand, within CA264_20130at 4641.450 kb on - strand, within CA264_20130at 4641.450 kb on - strand, within CA264_20130at 4641.450 kb on - strand, within CA264_20130at 4641.527 kb on - strand, within CA264_20130at 4641.537 kb on + strand, within CA264_20130at 4641.693 kb on + strandat 4641.761 kb on + strandat 4641.762 kb on - strandat 4641.855 kb on + strandat 4641.856 kb on - strandat 4641.856 kb on - strandat 4641.859 kb on + strandat 4641.860 kb on - strandat 4641.860 kb on - strandat 4641.860 kb on - strandat 4641.860 kb on - strandat 4641.870 kb on - strandat 4641.884 kb on - strandat 4641.919 kb on - strandat 4641.946 kb on + strandat 4641.946 kb on + strandat 4641.947 kb on - strandat 4641.947 kb on - strandat 4641.947 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
4,639,631 - +1.0
4,639,692 - +1.1
4,639,709 - +0.1
4,639,770 + +0.2
4,639,770 + +0.2
4,639,776 + +0.3
4,639,962 - CA264_20120 0.47 +0.4
4,640,070 - CA264_20120 0.73 -0.1
4,640,088 - CA264_20120 0.77 -0.2
4,640,141 - +0.5
4,640,167 + +0.6
4,640,170 - +0.8
4,640,178 + +0.7
4,640,300 + -0.0
4,640,300 + -0.3
4,640,349 - -0.2
4,640,380 + +0.3
4,640,385 + -0.3
4,640,385 + -0.6
4,640,385 + +0.3
4,640,385 + -0.8
4,640,385 + -0.3
4,640,385 + -0.6
4,640,385 + -0.5
4,640,385 + -1.1
4,640,385 + +0.7
4,640,385 + -0.7
4,640,385 + +0.2
4,640,385 + -0.2
4,640,385 + +0.1
4,640,385 + +0.1
4,640,385 + +0.2
4,640,385 + +0.1
4,640,385 + -1.5
4,640,385 + -0.2
4,640,385 + -0.7
4,640,385 + +0.2
4,640,385 + +1.6
4,640,385 + -0.1
4,640,386 - -0.4
4,640,386 - -0.7
4,640,386 - +0.3
4,640,386 - +1.7
4,640,386 - +1.2
4,640,386 - +0.3
4,640,386 - +0.1
4,640,386 - -0.4
4,640,386 - -0.3
4,640,386 - +0.4
4,640,386 - +0.1
4,640,386 - +0.8
4,640,386 - +1.1
4,640,386 - -0.6
4,640,386 - -0.2
4,640,386 - +0.2
4,640,386 - -0.6
4,640,386 - -0.5
4,640,388 + -0.3
4,640,388 + +1.6
4,640,503 + +1.1
4,640,504 - -0.5
4,640,542 + -0.2
4,640,543 - +0.8
4,640,577 + -0.3
4,640,578 - -0.1
4,640,578 - +1.4
4,640,578 - -0.6
4,640,601 - -0.3
4,640,616 - -0.2
4,640,629 + +0.0
4,640,649 - -0.6
4,640,653 + -0.2
4,640,653 + -1.1
4,640,654 - -0.7
4,640,682 + CA264_20125 0.15 +0.4
4,640,693 - CA264_20125 0.18 +0.2
4,640,856 - CA264_20125 0.66 +0.7
4,640,884 + CA264_20125 0.74 +0.1
4,640,884 + CA264_20125 0.74 +0.0
4,640,885 - CA264_20125 0.75 -1.6
4,640,888 - CA264_20125 0.75 -0.3
4,640,969 + -0.2
4,640,970 - -0.0
4,640,986 + +0.2
4,641,002 + -0.4
4,641,002 + -0.1
4,641,012 + +0.4
4,641,013 - -1.2
4,641,068 - -0.2
4,641,138 - CA264_20130 0.10 -0.9
4,641,174 - CA264_20130 0.17 -0.4
4,641,182 + CA264_20130 0.18 -0.3
4,641,256 + CA264_20130 0.32 +0.7
4,641,269 + CA264_20130 0.35 -1.4
4,641,269 + CA264_20130 0.35 +0.8
4,641,280 - CA264_20130 0.37 -1.2
4,641,323 + CA264_20130 0.45 +0.2
4,641,324 - CA264_20130 0.45 -0.3
4,641,324 - CA264_20130 0.45 +0.7
4,641,325 + CA264_20130 0.45 +0.2
4,641,325 + CA264_20130 0.45 -1.1
4,641,329 + CA264_20130 0.46 -0.1
4,641,380 + CA264_20130 0.55 +0.2
4,641,396 + CA264_20130 0.58 -1.9
4,641,449 + CA264_20130 0.68 -0.8
4,641,449 + CA264_20130 0.68 -0.1
4,641,449 + CA264_20130 0.68 +0.1
4,641,450 - CA264_20130 0.68 -1.1
4,641,450 - CA264_20130 0.68 +0.1
4,641,450 - CA264_20130 0.68 -0.3
4,641,527 - CA264_20130 0.83 -0.4
4,641,537 + CA264_20130 0.85 -0.7
4,641,693 + -0.2
4,641,761 + +0.1
4,641,762 - +0.6
4,641,855 + -0.0
4,641,856 - -0.1
4,641,856 - -1.6
4,641,859 + +0.2
4,641,860 - -1.3
4,641,860 - +0.1
4,641,860 - -0.8
4,641,860 - -0.1
4,641,870 - -0.3
4,641,884 - +0.8
4,641,919 - -0.6
4,641,946 + -0.9
4,641,946 + -0.2
4,641,947 - -1.0
4,641,947 - -0.5
4,641,947 - +0.2

Or see this region's nucleotide sequence