Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20100

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20090 and CA264_20095 overlap by 28 nucleotidesCA264_20095 and CA264_20100 are separated by 111 nucleotidesCA264_20100 and CA264_20105 are separated by 1 nucleotides CA264_20090: CA264_20090 - hypothetical protein, at 4,632,099 to 4,633,001 _20090 CA264_20095: CA264_20095 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 4,632,974 to 4,633,816 _20095 CA264_20100: CA264_20100 - mannose-1-phosphate guanylyltransferase, at 4,633,928 to 4,635,004 _20100 CA264_20105: CA264_20105 - D-arabinose 5-phosphate isomerase, at 4,635,006 to 4,635,977 _20105 Position (kb) 4633 4634 4635 4636Strain fitness (log2 ratio) -1 0 1at 4633.156 kb on - strand, within CA264_20095at 4633.252 kb on + strand, within CA264_20095at 4633.264 kb on + strand, within CA264_20095at 4633.332 kb on + strand, within CA264_20095at 4633.333 kb on - strand, within CA264_20095at 4633.524 kb on - strand, within CA264_20095at 4633.590 kb on - strand, within CA264_20095at 4633.785 kb on - strandat 4633.815 kb on - strandat 4633.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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4,633,156 - CA264_20095 0.22 +1.0
4,633,252 + CA264_20095 0.33 +0.8
4,633,264 + CA264_20095 0.34 +0.9
4,633,332 + CA264_20095 0.42 -0.1
4,633,333 - CA264_20095 0.43 -0.1
4,633,524 - CA264_20095 0.65 +0.1
4,633,590 - CA264_20095 0.73 +0.5
4,633,785 - +0.6
4,633,815 - +0.4
4,633,840 - -0.1

Or see this region's nucleotide sequence