Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19865

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19860 and CA264_19865 are separated by 138 nucleotidesCA264_19865 and CA264_19870 are separated by 394 nucleotides CA264_19860: CA264_19860 - NifU family protein, at 4,581,548 to 4,582,159 _19860 CA264_19865: CA264_19865 - hypothetical protein, at 4,582,298 to 4,582,531 _19865 CA264_19870: CA264_19870 - protein translocase subunit SecDF, at 4,582,926 to 4,585,922 _19870 Position (kb) 4582 4583Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4581.311 kb on - strandat 4581.311 kb on - strandat 4581.311 kb on - strandat 4581.363 kb on + strandat 4581.364 kb on - strandat 4581.367 kb on + strandat 4581.368 kb on - strandat 4581.485 kb on - strandat 4581.511 kb on + strandat 4581.511 kb on + strandat 4581.513 kb on + strandat 4581.513 kb on + strandat 4581.514 kb on - strandat 4581.582 kb on - strandat 4581.832 kb on - strand, within CA264_19860at 4581.956 kb on - strand, within CA264_19860at 4581.959 kb on + strand, within CA264_19860at 4581.959 kb on + strand, within CA264_19860at 4581.959 kb on + strand, within CA264_19860at 4581.960 kb on - strand, within CA264_19860at 4581.960 kb on - strand, within CA264_19860at 4582.004 kb on - strand, within CA264_19860at 4582.074 kb on + strand, within CA264_19860at 4582.157 kb on + strandat 4582.178 kb on - strandat 4582.184 kb on + strandat 4582.227 kb on - strandat 4582.306 kb on + strandat 4582.306 kb on + strandat 4582.338 kb on + strand, within CA264_19865at 4582.365 kb on + strand, within CA264_19865at 4582.366 kb on - strand, within CA264_19865at 4582.375 kb on - strand, within CA264_19865at 4582.375 kb on - strand, within CA264_19865at 4582.375 kb on - strand, within CA264_19865at 4582.375 kb on - strand, within CA264_19865at 4582.546 kb on - strandat 4582.601 kb on - strandat 4582.634 kb on - strandat 4582.634 kb on - strandat 4582.686 kb on + strandat 4582.686 kb on + strandat 4582.692 kb on + strandat 4582.713 kb on + strandat 4582.713 kb on + strandat 4582.714 kb on - strandat 4582.714 kb on - strandat 4582.751 kb on + strandat 4582.752 kb on - strandat 4582.752 kb on - strandat 4582.753 kb on + strandat 4582.754 kb on - strandat 4582.754 kb on - strandat 4582.754 kb on - strandat 4582.804 kb on + strandat 4582.805 kb on - strandat 4582.816 kb on + strandat 4582.816 kb on + strandat 4582.819 kb on - strandat 4582.858 kb on + strandat 4582.859 kb on - strandat 4582.861 kb on - strandat 4582.861 kb on - strandat 4582.861 kb on - strandat 4582.864 kb on + strandat 4582.865 kb on - strandat 4582.865 kb on - strandat 4582.865 kb on - strandat 4582.865 kb on - strandat 4582.865 kb on - strandat 4582.919 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
4,581,311 - -0.6
4,581,311 - +0.6
4,581,311 - -0.8
4,581,363 + -0.0
4,581,364 - +0.8
4,581,367 + +1.6
4,581,368 - +3.1
4,581,485 - -1.5
4,581,511 + +0.7
4,581,511 + +0.6
4,581,513 + +0.6
4,581,513 + -0.3
4,581,514 - -1.2
4,581,582 - -0.5
4,581,832 - CA264_19860 0.46 -0.8
4,581,956 - CA264_19860 0.67 -0.8
4,581,959 + CA264_19860 0.67 +0.9
4,581,959 + CA264_19860 0.67 -1.3
4,581,959 + CA264_19860 0.67 -0.4
4,581,960 - CA264_19860 0.67 -2.5
4,581,960 - CA264_19860 0.67 -0.6
4,582,004 - CA264_19860 0.75 -1.3
4,582,074 + CA264_19860 0.86 -0.9
4,582,157 + +1.4
4,582,178 - -1.1
4,582,184 + -0.0
4,582,227 - -0.2
4,582,306 + +0.9
4,582,306 + +0.6
4,582,338 + CA264_19865 0.17 +0.6
4,582,365 + CA264_19865 0.29 +0.8
4,582,366 - CA264_19865 0.29 +0.0
4,582,375 - CA264_19865 0.33 +0.2
4,582,375 - CA264_19865 0.33 +0.6
4,582,375 - CA264_19865 0.33 -0.8
4,582,375 - CA264_19865 0.33 -0.4
4,582,546 - +0.6
4,582,601 - +0.2
4,582,634 - +0.9
4,582,634 - +1.3
4,582,686 + +0.2
4,582,686 + +1.0
4,582,692 + +0.1
4,582,713 + +0.3
4,582,713 + -1.1
4,582,714 - +0.1
4,582,714 - -1.6
4,582,751 + -0.3
4,582,752 - -0.7
4,582,752 - -0.3
4,582,753 + +0.4
4,582,754 - -1.0
4,582,754 - +0.4
4,582,754 - -0.7
4,582,804 + +0.0
4,582,805 - +0.4
4,582,816 + +0.3
4,582,816 + +0.6
4,582,819 - +0.5
4,582,858 + -0.5
4,582,859 - -0.2
4,582,861 - -0.0
4,582,861 - +0.1
4,582,861 - +0.3
4,582,864 + +0.5
4,582,865 - -0.2
4,582,865 - -1.1
4,582,865 - -0.8
4,582,865 - -0.5
4,582,865 - -0.3
4,582,919 + +0.6

Or see this region's nucleotide sequence