Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19755

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19750 and CA264_19755 are separated by 262 nucleotidesCA264_19755 and CA264_19760 are separated by 119 nucleotides CA264_19750: CA264_19750 - IMP dehydrogenase, at 4,559,242 to 4,560,711 _19750 CA264_19755: CA264_19755 - rhodanese, at 4,560,974 to 4,561,291 _19755 CA264_19760: CA264_19760 - hypothetical protein, at 4,561,411 to 4,562,124 _19760 Position (kb) 4560 4561 4562Strain fitness (log2 ratio) -1 0 1at 4560.168 kb on + strand, within CA264_19750at 4560.333 kb on + strand, within CA264_19750at 4560.441 kb on + strand, within CA264_19750at 4560.442 kb on - strand, within CA264_19750at 4560.452 kb on - strand, within CA264_19750at 4560.452 kb on - strand, within CA264_19750at 4560.597 kb on + strandat 4560.642 kb on - strandat 4560.733 kb on + strandat 4560.733 kb on + strandat 4560.760 kb on + strandat 4560.769 kb on - strandat 4560.831 kb on - strandat 4560.897 kb on - strandat 4560.941 kb on + strandat 4560.953 kb on + strandat 4560.976 kb on - strandat 4560.978 kb on + strandat 4561.313 kb on - strandat 4561.315 kb on - strandat 4561.321 kb on - strandat 4561.339 kb on - strandat 4561.392 kb on - strandat 4561.431 kb on - strandat 4561.541 kb on - strand, within CA264_19760at 4561.687 kb on + strand, within CA264_19760at 4561.691 kb on - strand, within CA264_19760at 4561.750 kb on + strand, within CA264_19760at 4561.750 kb on + strand, within CA264_19760at 4561.751 kb on - strand, within CA264_19760at 4561.751 kb on - strand, within CA264_19760at 4561.912 kb on + strand, within CA264_19760at 4562.020 kb on - strand, within CA264_19760at 4562.128 kb on + strandat 4562.229 kb on + strandat 4562.230 kb on - strandat 4562.273 kb on + strandat 4562.274 kb on + strandat 4562.274 kb on + strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.275 kb on - strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.278 kb on + strandat 4562.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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4,560,168 + CA264_19750 0.63 -1.3
4,560,333 + CA264_19750 0.74 +0.1
4,560,441 + CA264_19750 0.82 -1.7
4,560,442 - CA264_19750 0.82 -1.2
4,560,452 - CA264_19750 0.82 -0.7
4,560,452 - CA264_19750 0.82 +0.2
4,560,597 + -0.4
4,560,642 - -0.7
4,560,733 + -0.4
4,560,733 + -0.6
4,560,760 + +0.3
4,560,769 - -0.0
4,560,831 - +1.4
4,560,897 - -0.1
4,560,941 + +0.5
4,560,953 + +0.4
4,560,976 - +0.2
4,560,978 + +0.8
4,561,313 - -0.4
4,561,315 - -0.5
4,561,321 - -0.2
4,561,339 - -0.9
4,561,392 - +0.1
4,561,431 - +0.4
4,561,541 - CA264_19760 0.18 -0.0
4,561,687 + CA264_19760 0.39 +0.3
4,561,691 - CA264_19760 0.39 -0.1
4,561,750 + CA264_19760 0.47 +0.5
4,561,750 + CA264_19760 0.47 +0.4
4,561,751 - CA264_19760 0.48 -1.1
4,561,751 - CA264_19760 0.48 +0.4
4,561,912 + CA264_19760 0.70 -1.1
4,562,020 - CA264_19760 0.85 +1.1
4,562,128 + -0.1
4,562,229 + -0.5
4,562,230 - -0.5
4,562,273 + -0.1
4,562,274 + +0.2
4,562,274 + +0.2
4,562,275 - -0.9
4,562,275 - +1.1
4,562,275 - -0.7
4,562,275 - -0.1
4,562,275 - +0.1
4,562,278 + -0.2
4,562,278 + +1.0
4,562,278 + -1.4
4,562,278 + +0.1
4,562,281 - -0.7

Or see this region's nucleotide sequence