Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19695

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19690 and CA264_19695 are separated by 177 nucleotidesCA264_19695 and CA264_19700 are separated by 253 nucleotides CA264_19690: CA264_19690 - ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member, at 4,545,539 to 4,546,348 _19690 CA264_19695: CA264_19695 - DNA recombination/repair protein RecA, at 4,546,526 to 4,547,572 _19695 CA264_19700: CA264_19700 - hypothetical protein, at 4,547,826 to 4,548,884 _19700 Position (kb) 4546 4547 4548Strain fitness (log2 ratio) -3 -2 -1 0 1at 4545.577 kb on + strandat 4545.578 kb on - strandat 4545.807 kb on - strand, within CA264_19690at 4545.848 kb on - strand, within CA264_19690at 4545.852 kb on + strand, within CA264_19690at 4545.909 kb on - strand, within CA264_19690at 4545.909 kb on - strand, within CA264_19690at 4545.957 kb on - strand, within CA264_19690at 4545.957 kb on - strand, within CA264_19690at 4545.976 kb on - strand, within CA264_19690at 4546.008 kb on + strand, within CA264_19690at 4546.008 kb on + strand, within CA264_19690at 4546.022 kb on + strand, within CA264_19690at 4546.023 kb on - strand, within CA264_19690at 4546.060 kb on + strand, within CA264_19690at 4546.064 kb on + strand, within CA264_19690at 4546.064 kb on + strand, within CA264_19690at 4546.065 kb on - strand, within CA264_19690at 4546.065 kb on - strand, within CA264_19690at 4546.065 kb on - strand, within CA264_19690at 4546.065 kb on - strand, within CA264_19690at 4546.130 kb on + strand, within CA264_19690at 4546.130 kb on + strand, within CA264_19690at 4546.181 kb on + strand, within CA264_19690at 4546.228 kb on + strand, within CA264_19690at 4546.230 kb on + strand, within CA264_19690at 4546.231 kb on - strand, within CA264_19690at 4546.234 kb on + strand, within CA264_19690at 4546.234 kb on + strand, within CA264_19690at 4546.235 kb on - strand, within CA264_19690at 4546.320 kb on - strandat 4546.348 kb on + strandat 4546.348 kb on + strandat 4546.387 kb on + strandat 4546.442 kb on + strandat 4546.499 kb on + strandat 4546.503 kb on + strandat 4547.595 kb on - strandat 4547.596 kb on + strandat 4547.688 kb on - strandat 4547.773 kb on + strandat 4547.773 kb on + strandat 4547.773 kb on + strandat 4547.773 kb on + strandat 4547.774 kb on - strandat 4547.777 kb on + strandat 4547.777 kb on + strandat 4547.778 kb on - strandat 4547.902 kb on - strandat 4547.926 kb on - strandat 4547.927 kb on + strandat 4547.983 kb on + strand, within CA264_19700at 4547.984 kb on - strand, within CA264_19700at 4547.984 kb on - strand, within CA264_19700at 4548.056 kb on + strand, within CA264_19700at 4548.127 kb on - strand, within CA264_19700at 4548.130 kb on + strand, within CA264_19700at 4548.278 kb on - strand, within CA264_19700at 4548.504 kb on + strand, within CA264_19700at 4548.505 kb on - strand, within CA264_19700at 4548.570 kb on + strand, within CA264_19700

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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4,545,577 + +1.0
4,545,578 - +0.8
4,545,807 - CA264_19690 0.33 +1.0
4,545,848 - CA264_19690 0.38 +0.1
4,545,852 + CA264_19690 0.39 +0.1
4,545,909 - CA264_19690 0.46 +0.2
4,545,909 - CA264_19690 0.46 +0.0
4,545,957 - CA264_19690 0.52 -1.2
4,545,957 - CA264_19690 0.52 +0.4
4,545,976 - CA264_19690 0.54 +0.1
4,546,008 + CA264_19690 0.58 +0.6
4,546,008 + CA264_19690 0.58 +0.3
4,546,022 + CA264_19690 0.60 +0.6
4,546,023 - CA264_19690 0.60 -0.4
4,546,060 + CA264_19690 0.64 -0.3
4,546,064 + CA264_19690 0.65 -0.3
4,546,064 + CA264_19690 0.65 -0.1
4,546,065 - CA264_19690 0.65 +0.6
4,546,065 - CA264_19690 0.65 +0.2
4,546,065 - CA264_19690 0.65 +0.3
4,546,065 - CA264_19690 0.65 -0.1
4,546,130 + CA264_19690 0.73 +0.8
4,546,130 + CA264_19690 0.73 -0.5
4,546,181 + CA264_19690 0.79 +1.4
4,546,228 + CA264_19690 0.85 +0.5
4,546,230 + CA264_19690 0.85 +0.5
4,546,231 - CA264_19690 0.85 -1.0
4,546,234 + CA264_19690 0.86 -1.1
4,546,234 + CA264_19690 0.86 -1.1
4,546,235 - CA264_19690 0.86 +0.2
4,546,320 - +0.8
4,546,348 + +0.1
4,546,348 + +0.4
4,546,387 + +0.6
4,546,442 + -0.2
4,546,499 + -0.7
4,546,503 + -1.1
4,547,595 - +0.4
4,547,596 + -0.3
4,547,688 - -0.4
4,547,773 + +0.2
4,547,773 + -3.1
4,547,773 + +0.1
4,547,773 + +1.6
4,547,774 - +0.3
4,547,777 + +0.4
4,547,777 + +0.4
4,547,778 - -0.7
4,547,902 - +0.1
4,547,926 - -1.1
4,547,927 + -0.0
4,547,983 + CA264_19700 0.15 +0.8
4,547,984 - CA264_19700 0.15 +0.6
4,547,984 - CA264_19700 0.15 -0.1
4,548,056 + CA264_19700 0.22 -0.8
4,548,127 - CA264_19700 0.28 +0.5
4,548,130 + CA264_19700 0.29 +0.3
4,548,278 - CA264_19700 0.43 +0.5
4,548,504 + CA264_19700 0.64 +0.5
4,548,505 - CA264_19700 0.64 +0.2
4,548,570 + CA264_19700 0.70 -0.7

Or see this region's nucleotide sequence