Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19335

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19325 and CA264_19330 are separated by 18 nucleotidesCA264_19330 and CA264_19335 are separated by 3 nucleotidesCA264_19335 and CA264_19340 are separated by 9 nucleotidesCA264_19340 and CA264_19345 are separated by 177 nucleotides CA264_19325: CA264_19325 - 30S ribosomal protein S12, at 4,485,014 to 4,485,427 _19325 CA264_19330: CA264_19330 - 30S ribosomal protein S7, at 4,485,446 to 4,485,913 _19330 CA264_19335: CA264_19335 - elongation factor G, at 4,485,917 to 4,488,022 _19335 CA264_19340: CA264_19340 - 30S ribosomal protein S10, at 4,488,032 to 4,488,337 _19340 CA264_19345: CA264_19345 - 50S ribosomal protein L3, at 4,488,515 to 4,489,132 _19345 Position (kb) 4485 4486 4487 4488 4489Strain fitness (log2 ratio) -1 0 1 2at 4487.986 kb on + strandat 4487.986 kb on + strandat 4488.407 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
4,487,986 + +1.0
4,487,986 + +2.1
4,488,407 + +0.5

Or see this region's nucleotide sequence