Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15945

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15935 and CA264_15940 are separated by 113 nucleotidesCA264_15940 and CA264_15945 are separated by 236 nucleotidesCA264_15945 and CA264_15950 are separated by 404 nucleotides CA264_15935: CA264_15935 - hypothetical protein, at 3,717,118 to 3,717,846 _15935 CA264_15940: CA264_15940 - hypothetical protein, at 3,717,960 to 3,718,601 _15940 CA264_15945: CA264_15945 - NAD-dependent epimerase, at 3,718,838 to 3,719,812 _15945 CA264_15950: CA264_15950 - hypothetical protein, at 3,720,217 to 3,721,500 _15950 Position (kb) 3718 3719 3720Strain fitness (log2 ratio) -2 -1 0 1 2at 3717.839 kb on - strandat 3717.851 kb on + strandat 3717.852 kb on - strandat 3717.868 kb on - strandat 3717.868 kb on - strandat 3717.869 kb on + strandat 3717.877 kb on - strandat 3717.877 kb on - strandat 3717.893 kb on + strandat 3717.961 kb on + strandat 3718.034 kb on + strand, within CA264_15940at 3718.035 kb on - strand, within CA264_15940at 3718.035 kb on - strand, within CA264_15940at 3718.118 kb on - strand, within CA264_15940at 3718.135 kb on + strand, within CA264_15940at 3718.136 kb on - strand, within CA264_15940at 3718.178 kb on - strand, within CA264_15940at 3718.178 kb on - strand, within CA264_15940at 3718.221 kb on + strand, within CA264_15940at 3718.222 kb on - strand, within CA264_15940at 3718.279 kb on + strand, within CA264_15940at 3718.379 kb on - strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.385 kb on - strand, within CA264_15940at 3718.588 kb on - strandat 3718.608 kb on - strandat 3718.609 kb on + strandat 3718.609 kb on + strandat 3718.626 kb on - strandat 3718.640 kb on + strandat 3718.640 kb on + strandat 3718.649 kb on + strandat 3718.649 kb on + strandat 3718.649 kb on + strandat 3718.650 kb on - strandat 3718.651 kb on + strandat 3718.651 kb on + strandat 3718.652 kb on - strandat 3718.652 kb on - strandat 3718.654 kb on + strandat 3718.654 kb on + strandat 3718.654 kb on + strandat 3718.655 kb on - strandat 3718.655 kb on - strandat 3718.656 kb on + strandat 3718.657 kb on - strandat 3718.658 kb on + strandat 3718.659 kb on - strandat 3718.662 kb on - strandat 3718.662 kb on - strandat 3718.734 kb on + strandat 3718.771 kb on + strandat 3718.822 kb on - strandat 3718.829 kb on + strandat 3718.839 kb on + strandat 3718.840 kb on - strandat 3718.906 kb on + strandat 3718.906 kb on + strandat 3718.952 kb on + strand, within CA264_15945at 3718.952 kb on + strand, within CA264_15945at 3718.953 kb on - strand, within CA264_15945at 3719.001 kb on + strand, within CA264_15945at 3719.141 kb on + strand, within CA264_15945at 3719.157 kb on + strand, within CA264_15945at 3719.157 kb on + strand, within CA264_15945at 3719.158 kb on - strand, within CA264_15945at 3719.173 kb on - strand, within CA264_15945at 3719.173 kb on - strand, within CA264_15945at 3719.173 kb on - strand, within CA264_15945at 3719.173 kb on - strand, within CA264_15945at 3719.173 kb on - strand, within CA264_15945at 3719.226 kb on + strand, within CA264_15945at 3719.226 kb on + strand, within CA264_15945at 3719.227 kb on - strand, within CA264_15945at 3719.230 kb on + strand, within CA264_15945at 3719.230 kb on + strand, within CA264_15945at 3719.230 kb on + strand, within CA264_15945at 3719.231 kb on - strand, within CA264_15945at 3719.231 kb on - strand, within CA264_15945at 3719.272 kb on + strand, within CA264_15945at 3719.272 kb on + strand, within CA264_15945at 3719.335 kb on - strand, within CA264_15945at 3719.373 kb on + strand, within CA264_15945at 3719.503 kb on + strand, within CA264_15945at 3719.504 kb on - strand, within CA264_15945at 3719.727 kb on + strandat 3719.728 kb on - strandat 3719.728 kb on - strandat 3719.728 kb on - strandat 3719.763 kb on - strandat 3719.817 kb on + strandat 3719.817 kb on + strandat 3719.818 kb on - strandat 3719.970 kb on - strandat 3719.970 kb on - strandat 3719.974 kb on - strandat 3719.979 kb on - strandat 3719.979 kb on - strandat 3720.012 kb on + strandat 3720.013 kb on - strandat 3720.061 kb on - strandat 3720.065 kb on - strandat 3720.065 kb on - strandat 3720.067 kb on + strandat 3720.068 kb on - strandat 3720.078 kb on + strandat 3720.125 kb on + strandat 3720.126 kb on - strandat 3720.126 kb on - strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.160 kb on + strandat 3720.161 kb on - strandat 3720.161 kb on - strandat 3720.161 kb on - strandat 3720.165 kb on - strandat 3720.165 kb on - strandat 3720.165 kb on - strandat 3720.190 kb on + strandat 3720.194 kb on + strandat 3720.216 kb on + strandat 3720.217 kb on - strandat 3720.347 kb on + strand, within CA264_15950at 3720.584 kb on + strand, within CA264_15950at 3720.681 kb on - strand, within CA264_15950at 3720.685 kb on - strand, within CA264_15950at 3720.777 kb on - strand, within CA264_15950

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,717,839 - +1.4
3,717,851 + -0.8
3,717,852 - -0.2
3,717,868 - -0.3
3,717,868 - +0.3
3,717,869 + +0.8
3,717,877 - +0.3
3,717,877 - -0.6
3,717,893 + +2.2
3,717,961 + -1.3
3,718,034 + CA264_15940 0.12 +0.1
3,718,035 - CA264_15940 0.12 +0.7
3,718,035 - CA264_15940 0.12 -0.2
3,718,118 - CA264_15940 0.25 +1.5
3,718,135 + CA264_15940 0.27 -0.1
3,718,136 - CA264_15940 0.27 +0.2
3,718,178 - CA264_15940 0.34 -0.1
3,718,178 - CA264_15940 0.34 +0.1
3,718,221 + CA264_15940 0.41 +0.4
3,718,222 - CA264_15940 0.41 +1.5
3,718,279 + CA264_15940 0.50 +0.0
3,718,379 - CA264_15940 0.65 +0.2
3,718,384 + CA264_15940 0.66 -0.5
3,718,384 + CA264_15940 0.66 +0.1
3,718,384 + CA264_15940 0.66 +0.3
3,718,384 + CA264_15940 0.66 +0.2
3,718,384 + CA264_15940 0.66 -0.2
3,718,385 - CA264_15940 0.66 +1.7
3,718,588 - +0.2
3,718,608 - +0.7
3,718,609 + -0.1
3,718,609 + -0.2
3,718,626 - +0.2
3,718,640 + -0.2
3,718,640 + -0.9
3,718,649 + +0.1
3,718,649 + +2.5
3,718,649 + +0.4
3,718,650 - +0.8
3,718,651 + +0.5
3,718,651 + +0.5
3,718,652 - -1.4
3,718,652 - -0.6
3,718,654 + +0.1
3,718,654 + +0.1
3,718,654 + +0.0
3,718,655 - -1.2
3,718,655 - -0.3
3,718,656 + -0.1
3,718,657 - +1.1
3,718,658 + +1.4
3,718,659 - +0.0
3,718,662 - -0.6
3,718,662 - +0.4
3,718,734 + -0.4
3,718,771 + +1.1
3,718,822 - +0.2
3,718,829 + -0.3
3,718,839 + -0.4
3,718,840 - +1.4
3,718,906 + +1.5
3,718,906 + +1.5
3,718,952 + CA264_15945 0.12 -0.5
3,718,952 + CA264_15945 0.12 +1.8
3,718,953 - CA264_15945 0.12 +0.7
3,719,001 + CA264_15945 0.17 +0.8
3,719,141 + CA264_15945 0.31 -1.3
3,719,157 + CA264_15945 0.33 +0.2
3,719,157 + CA264_15945 0.33 +0.1
3,719,158 - CA264_15945 0.33 +0.4
3,719,173 - CA264_15945 0.34 +0.2
3,719,173 - CA264_15945 0.34 +1.1
3,719,173 - CA264_15945 0.34 +0.6
3,719,173 - CA264_15945 0.34 +0.5
3,719,173 - CA264_15945 0.34 +0.7
3,719,226 + CA264_15945 0.40 +0.4
3,719,226 + CA264_15945 0.40 -0.3
3,719,227 - CA264_15945 0.40 +0.5
3,719,230 + CA264_15945 0.40 +0.7
3,719,230 + CA264_15945 0.40 +0.4
3,719,230 + CA264_15945 0.40 +0.6
3,719,231 - CA264_15945 0.40 +0.9
3,719,231 - CA264_15945 0.40 +0.9
3,719,272 + CA264_15945 0.45 +0.5
3,719,272 + CA264_15945 0.45 +0.7
3,719,335 - CA264_15945 0.51 +0.2
3,719,373 + CA264_15945 0.55 +1.0
3,719,503 + CA264_15945 0.68 +1.3
3,719,504 - CA264_15945 0.68 +1.0
3,719,727 + +1.5
3,719,728 - -0.6
3,719,728 - +0.5
3,719,728 - +1.1
3,719,763 - +0.3
3,719,817 + -2.2
3,719,817 + -1.3
3,719,818 - +1.0
3,719,970 - -0.4
3,719,970 - -1.7
3,719,974 - +0.2
3,719,979 - -1.4
3,719,979 - -0.0
3,720,012 + +1.0
3,720,013 - +0.1
3,720,061 - +0.4
3,720,065 - +0.2
3,720,065 - -0.9
3,720,067 + -1.4
3,720,068 - +0.5
3,720,078 + -1.6
3,720,125 + -0.0
3,720,126 - -0.5
3,720,126 - -0.3
3,720,160 + -0.1
3,720,160 + -1.6
3,720,160 + -0.6
3,720,160 + -1.2
3,720,160 + +0.9
3,720,161 - -0.9
3,720,161 - -0.4
3,720,161 - +0.0
3,720,165 - -0.7
3,720,165 - -1.4
3,720,165 - -0.8
3,720,190 + -1.2
3,720,194 + -1.5
3,720,216 + -0.4
3,720,217 - +1.0
3,720,347 + CA264_15950 0.10 -0.6
3,720,584 + CA264_15950 0.29 -1.2
3,720,681 - CA264_15950 0.36 +1.5
3,720,685 - CA264_15950 0.36 -0.5
3,720,777 - CA264_15950 0.44 -0.8

Or see this region's nucleotide sequence