Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14745

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14740 and CA264_14745 are separated by 143 nucleotidesCA264_14745 and CA264_14750 are separated by 84 nucleotides CA264_14740: CA264_14740 - dihydroorotase, at 3,462,253 to 3,463,587 _14740 CA264_14745: CA264_14745 - DEAD/DEAH box helicase, at 3,463,731 to 3,465,092 _14745 CA264_14750: CA264_14750 - IS481 family transposase, at 3,465,177 to 3,466,190 _14750 Position (kb) 3463 3464 3465 3466Strain fitness (log2 ratio) -1 0 1at 3462.752 kb on - strand, within CA264_14740at 3462.809 kb on - strand, within CA264_14740at 3462.935 kb on + strand, within CA264_14740at 3462.967 kb on + strand, within CA264_14740at 3463.004 kb on + strand, within CA264_14740at 3463.183 kb on - strand, within CA264_14740at 3463.233 kb on - strand, within CA264_14740at 3463.263 kb on + strand, within CA264_14740at 3463.264 kb on - strand, within CA264_14740at 3463.456 kb on + strandat 3463.481 kb on - strandat 3463.534 kb on - strandat 3463.537 kb on + strandat 3463.538 kb on - strandat 3463.539 kb on + strandat 3463.540 kb on - strandat 3463.540 kb on - strandat 3463.593 kb on + strandat 3463.614 kb on - strandat 3463.616 kb on + strandat 3463.671 kb on - strandat 3463.702 kb on + strandat 3463.707 kb on + strandat 3463.717 kb on + strandat 3463.718 kb on - strandat 3463.719 kb on + strandat 3463.719 kb on + strandat 3463.720 kb on - strandat 3463.724 kb on + strandat 3465.052 kb on - strandat 3465.117 kb on - strandat 3465.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,462,752 - CA264_14740 0.37 +0.3
3,462,809 - CA264_14740 0.42 +0.4
3,462,935 + CA264_14740 0.51 -0.5
3,462,967 + CA264_14740 0.53 -1.0
3,463,004 + CA264_14740 0.56 -1.0
3,463,183 - CA264_14740 0.70 +0.1
3,463,233 - CA264_14740 0.73 -0.0
3,463,263 + CA264_14740 0.76 +1.2
3,463,264 - CA264_14740 0.76 -0.7
3,463,456 + -0.8
3,463,481 - -0.2
3,463,534 - +1.5
3,463,537 + +0.8
3,463,538 - -1.3
3,463,539 + +0.8
3,463,540 - -0.0
3,463,540 - -0.7
3,463,593 + +0.2
3,463,614 - +0.3
3,463,616 + -0.8
3,463,671 - -0.1
3,463,702 + +0.8
3,463,707 + +1.3
3,463,717 + -0.0
3,463,718 - +0.0
3,463,719 + -0.2
3,463,719 + -0.9
3,463,720 - +0.5
3,463,724 + +1.2
3,465,052 - +0.2
3,465,117 - +0.6
3,465,130 - +1.4

Or see this region's nucleotide sequence