Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14325

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14315 and CA264_14320 are separated by 175 nucleotidesCA264_14320 and CA264_14325 are separated by 78 nucleotidesCA264_14325 and CA264_14330 are separated by 262 nucleotides CA264_14315: CA264_14315 - hypothetical protein, at 3,361,450 to 3,362,004 _14315 CA264_14320: CA264_14320 - tRNA-specific adenosine deaminase, at 3,362,180 to 3,362,593 _14320 CA264_14325: CA264_14325 - superoxide dismutase, at 3,362,672 to 3,363,280 _14325 CA264_14330: CA264_14330 - hypothetical protein, at 3,363,543 to 3,365,882 _14330 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1at 3361.767 kb on + strand, within CA264_14315at 3361.891 kb on + strand, within CA264_14315at 3361.891 kb on + strand, within CA264_14315at 3361.915 kb on + strand, within CA264_14315at 3361.924 kb on - strand, within CA264_14315at 3361.995 kb on + strandat 3361.999 kb on - strandat 3362.012 kb on + strandat 3362.012 kb on + strandat 3362.012 kb on + strandat 3362.016 kb on + strandat 3362.016 kb on + strandat 3362.017 kb on - strandat 3362.017 kb on - strandat 3362.017 kb on - strandat 3362.017 kb on - strandat 3362.020 kb on + strandat 3362.021 kb on - strandat 3362.021 kb on - strandat 3362.021 kb on - strandat 3362.024 kb on + strandat 3362.135 kb on - strandat 3362.443 kb on - strand, within CA264_14320at 3362.486 kb on - strand, within CA264_14320at 3362.654 kb on + strandat 3363.296 kb on + strandat 3363.303 kb on + strandat 3363.309 kb on + strandat 3363.309 kb on + strandat 3363.316 kb on + strandat 3363.340 kb on + strandat 3363.340 kb on + strandat 3363.340 kb on + strandat 3363.342 kb on + strandat 3363.388 kb on + strandat 3363.419 kb on + strandat 3363.419 kb on + strandat 3363.419 kb on + strandat 3363.419 kb on + strandat 3363.420 kb on - strandat 3363.420 kb on - strandat 3363.428 kb on + strandat 3363.428 kb on + strandat 3363.429 kb on - strandat 3363.467 kb on - strandat 3363.470 kb on + strandat 3363.471 kb on - strandat 3363.503 kb on - strandat 3363.652 kb on + strandat 3363.653 kb on - strandat 3363.692 kb on + strandat 3363.693 kb on - strandat 3363.746 kb on + strandat 3363.746 kb on + strandat 3363.746 kb on + strandat 3363.746 kb on + strandat 3363.746 kb on + strandat 3363.746 kb on + strandat 3363.794 kb on + strand, within CA264_14330at 3363.794 kb on + strand, within CA264_14330at 3363.794 kb on + strand, within CA264_14330at 3363.794 kb on + strand, within CA264_14330at 3363.795 kb on - strand, within CA264_14330at 3363.820 kb on + strand, within CA264_14330at 3363.872 kb on + strand, within CA264_14330at 3363.928 kb on - strand, within CA264_14330at 3363.958 kb on + strand, within CA264_14330at 3363.979 kb on + strand, within CA264_14330at 3364.085 kb on + strand, within CA264_14330at 3364.086 kb on - strand, within CA264_14330at 3364.087 kb on + strand, within CA264_14330at 3364.087 kb on + strand, within CA264_14330at 3364.088 kb on - strand, within CA264_14330at 3364.088 kb on - strand, within CA264_14330at 3364.088 kb on - strand, within CA264_14330at 3364.088 kb on - strand, within CA264_14330at 3364.091 kb on + strand, within CA264_14330at 3364.091 kb on + strand, within CA264_14330at 3364.091 kb on + strand, within CA264_14330at 3364.092 kb on - strand, within CA264_14330at 3364.108 kb on - strand, within CA264_14330at 3364.147 kb on + strand, within CA264_14330at 3364.185 kb on + strand, within CA264_14330at 3364.186 kb on - strand, within CA264_14330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
3,361,767 + CA264_14315 0.57 -0.0
3,361,891 + CA264_14315 0.79 +0.2
3,361,891 + CA264_14315 0.79 +0.0
3,361,915 + CA264_14315 0.84 -1.0
3,361,924 - CA264_14315 0.85 -0.4
3,361,995 + -0.2
3,361,999 - +1.2
3,362,012 + +0.7
3,362,012 + -0.2
3,362,012 + +0.2
3,362,016 + +0.4
3,362,016 + +0.1
3,362,017 - +1.0
3,362,017 - +1.2
3,362,017 - +0.3
3,362,017 - +0.6
3,362,020 + +0.9
3,362,021 - +0.4
3,362,021 - +1.3
3,362,021 - +0.5
3,362,024 + +0.2
3,362,135 - +0.6
3,362,443 - CA264_14320 0.64 -1.6
3,362,486 - CA264_14320 0.74 -0.4
3,362,654 + -0.7
3,363,296 + -0.9
3,363,303 + -1.4
3,363,309 + -0.1
3,363,309 + -2.4
3,363,316 + -1.9
3,363,340 + -1.3
3,363,340 + -0.9
3,363,340 + -2.0
3,363,342 + -2.0
3,363,388 + -0.6
3,363,419 + +0.3
3,363,419 + -0.1
3,363,419 + -1.0
3,363,419 + +1.1
3,363,420 - -0.9
3,363,420 - -1.4
3,363,428 + -0.8
3,363,428 + -2.3
3,363,429 - -1.4
3,363,467 - -1.3
3,363,470 + -0.7
3,363,471 - -0.9
3,363,503 - -1.1
3,363,652 + -0.1
3,363,653 - -0.3
3,363,692 + -1.1
3,363,693 - +0.1
3,363,746 + -0.4
3,363,746 + -0.4
3,363,746 + -0.4
3,363,746 + -0.8
3,363,746 + +0.5
3,363,746 + -0.9
3,363,794 + CA264_14330 0.11 -0.5
3,363,794 + CA264_14330 0.11 -0.6
3,363,794 + CA264_14330 0.11 +0.3
3,363,794 + CA264_14330 0.11 -1.1
3,363,795 - CA264_14330 0.11 -0.6
3,363,820 + CA264_14330 0.12 +0.1
3,363,872 + CA264_14330 0.14 -0.3
3,363,928 - CA264_14330 0.16 -0.6
3,363,958 + CA264_14330 0.18 -0.8
3,363,979 + CA264_14330 0.19 -0.8
3,364,085 + CA264_14330 0.23 -0.4
3,364,086 - CA264_14330 0.23 -0.5
3,364,087 + CA264_14330 0.23 -0.4
3,364,087 + CA264_14330 0.23 +0.1
3,364,088 - CA264_14330 0.23 -0.6
3,364,088 - CA264_14330 0.23 -0.0
3,364,088 - CA264_14330 0.23 -0.1
3,364,088 - CA264_14330 0.23 +1.6
3,364,091 + CA264_14330 0.23 -0.3
3,364,091 + CA264_14330 0.23 +0.3
3,364,091 + CA264_14330 0.23 -0.9
3,364,092 - CA264_14330 0.23 -1.0
3,364,108 - CA264_14330 0.24 -1.0
3,364,147 + CA264_14330 0.26 -1.5
3,364,185 + CA264_14330 0.27 -0.3
3,364,186 - CA264_14330 0.27 -0.5

Or see this region's nucleotide sequence