Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14235

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14230 and CA264_14235 are separated by 2 nucleotidesCA264_14235 and CA264_14240 are separated by 129 nucleotidesCA264_14240 and CA264_14245 are separated by 4 nucleotides CA264_14230: CA264_14230 - Fe-S-binding domain-containing protein, at 3,339,338 to 3,340,318 _14230 CA264_14235: CA264_14235 - NADH-quinone oxidoreductase subunit H, at 3,340,321 to 3,341,376 _14235 CA264_14240: CA264_14240 - NADH-quinone oxidoreductase subunit I, at 3,341,506 to 3,341,970 _14240 CA264_14245: CA264_14245 - NADH-quinone oxidoreductase subunit J, at 3,341,975 to 3,342,493 _14245 Position (kb) 3340 3341 3342Strain fitness (log2 ratio) -2 -1 0 1 2at 3339.334 kb on - strandat 3340.258 kb on - strandat 3340.291 kb on + strandat 3340.332 kb on - strandat 3340.332 kb on - strandat 3340.338 kb on - strandat 3340.341 kb on - strandat 3341.379 kb on + strandat 3341.379 kb on + strandat 3341.379 kb on + strandat 3341.379 kb on + strandat 3341.380 kb on - strandat 3341.380 kb on - strandat 3341.420 kb on - strandat 3341.425 kb on + strandat 3341.425 kb on + strandat 3341.426 kb on - strandat 3341.426 kb on - strandat 3341.426 kb on - strandat 3341.427 kb on + strandat 3341.427 kb on + strandat 3341.427 kb on + strandat 3341.427 kb on + strandat 3341.428 kb on - strandat 3341.428 kb on - strandat 3341.428 kb on - strandat 3341.431 kb on + strandat 3341.431 kb on + strandat 3341.431 kb on + strandat 3341.432 kb on - strandat 3341.447 kb on + strandat 3341.447 kb on + strandat 3341.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,339,334 - +0.6
3,340,258 - -2.2
3,340,291 + +0.5
3,340,332 - -1.2
3,340,332 - -0.9
3,340,338 - -1.2
3,340,341 - -2.1
3,341,379 + -0.7
3,341,379 + -0.1
3,341,379 + -0.1
3,341,379 + -0.3
3,341,380 - -0.8
3,341,380 - -1.7
3,341,420 - -1.2
3,341,425 + -0.8
3,341,425 + -0.1
3,341,426 - -0.9
3,341,426 - -1.7
3,341,426 - -1.7
3,341,427 + +0.0
3,341,427 + +1.3
3,341,427 + +0.8
3,341,427 + +0.9
3,341,428 - -2.4
3,341,428 - -1.0
3,341,428 - +1.8
3,341,431 + +0.1
3,341,431 + +0.2
3,341,431 + -0.3
3,341,432 - -2.1
3,341,447 + -1.5
3,341,447 + +0.4
3,341,448 - -1.6

Or see this region's nucleotide sequence