Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13775

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13770 and CA264_13775 are separated by 775 nucleotidesCA264_13775 and CA264_13780 are separated by 163 nucleotides CA264_13770: CA264_13770 - DNA starvation/stationary phase protection protein, at 3,217,467 to 3,217,940 _13770 CA264_13775: CA264_13775 - hypothetical protein, at 3,218,716 to 3,220,203 _13775 CA264_13780: CA264_13780 - ribonuclease Y, at 3,220,367 to 3,221,965 _13780 Position (kb) 3218 3219 3220 3221Strain fitness (log2 ratio) -2 -1 0 1 2at 3217.722 kb on + strand, within CA264_13770at 3217.725 kb on - strand, within CA264_13770at 3217.725 kb on - strand, within CA264_13770at 3217.933 kb on + strandat 3217.934 kb on - strandat 3217.938 kb on + strandat 3217.938 kb on + strandat 3217.939 kb on - strandat 3218.032 kb on - strandat 3218.057 kb on - strandat 3218.057 kb on - strandat 3218.057 kb on - strandat 3218.060 kb on + strandat 3218.060 kb on + strandat 3218.061 kb on - strandat 3218.061 kb on - strandat 3218.062 kb on + strandat 3218.067 kb on + strandat 3218.068 kb on - strandat 3218.078 kb on + strandat 3218.078 kb on + strandat 3218.082 kb on + strandat 3218.102 kb on + strandat 3218.136 kb on + strandat 3218.189 kb on - strandat 3218.197 kb on - strandat 3218.248 kb on - strandat 3218.293 kb on - strandat 3218.298 kb on - strandat 3218.298 kb on - strandat 3218.310 kb on + strandat 3218.311 kb on - strandat 3218.316 kb on + strandat 3218.317 kb on - strandat 3218.317 kb on - strandat 3218.321 kb on + strandat 3218.322 kb on - strandat 3218.328 kb on - strandat 3218.401 kb on + strandat 3218.434 kb on + strandat 3218.434 kb on + strandat 3218.434 kb on + strandat 3218.469 kb on + strandat 3218.487 kb on - strandat 3218.488 kb on + strandat 3218.489 kb on - strandat 3218.489 kb on - strandat 3218.536 kb on + strandat 3218.552 kb on + strandat 3218.552 kb on + strandat 3218.588 kb on + strandat 3218.589 kb on - strandat 3218.631 kb on + strandat 3218.698 kb on + strandat 3218.699 kb on - strandat 3218.699 kb on - strandat 3218.708 kb on + strandat 3218.708 kb on + strandat 3218.708 kb on + strandat 3218.708 kb on + strandat 3218.709 kb on - strandat 3218.709 kb on - strandat 3218.709 kb on - strandat 3218.709 kb on - strandat 3218.710 kb on + strandat 3218.710 kb on + strandat 3218.711 kb on - strandat 3218.765 kb on - strandat 3218.768 kb on + strandat 3218.769 kb on - strandat 3218.769 kb on - strandat 3218.796 kb on - strandat 3218.803 kb on - strandat 3218.928 kb on + strand, within CA264_13775at 3218.932 kb on - strand, within CA264_13775at 3218.986 kb on + strand, within CA264_13775at 3219.020 kb on - strand, within CA264_13775at 3219.041 kb on + strand, within CA264_13775at 3219.041 kb on + strand, within CA264_13775at 3219.042 kb on - strand, within CA264_13775at 3219.042 kb on - strand, within CA264_13775at 3219.260 kb on + strand, within CA264_13775at 3219.261 kb on - strand, within CA264_13775at 3219.261 kb on - strand, within CA264_13775at 3219.297 kb on - strand, within CA264_13775at 3219.307 kb on + strand, within CA264_13775at 3219.308 kb on - strand, within CA264_13775at 3219.308 kb on - strand, within CA264_13775at 3219.308 kb on - strand, within CA264_13775at 3219.316 kb on + strand, within CA264_13775at 3219.316 kb on + strand, within CA264_13775at 3219.316 kb on + strand, within CA264_13775at 3219.316 kb on + strand, within CA264_13775at 3219.316 kb on + strand, within CA264_13775at 3219.316 kb on + strand, within CA264_13775at 3219.317 kb on - strand, within CA264_13775at 3219.317 kb on - strand, within CA264_13775at 3219.344 kb on - strand, within CA264_13775at 3219.439 kb on + strand, within CA264_13775at 3219.471 kb on + strand, within CA264_13775at 3219.474 kb on + strand, within CA264_13775at 3219.474 kb on + strand, within CA264_13775at 3219.474 kb on + strand, within CA264_13775at 3219.482 kb on + strand, within CA264_13775at 3219.499 kb on - strand, within CA264_13775at 3219.508 kb on + strand, within CA264_13775at 3219.509 kb on - strand, within CA264_13775at 3219.546 kb on - strand, within CA264_13775at 3219.598 kb on - strand, within CA264_13775at 3219.598 kb on - strand, within CA264_13775at 3219.631 kb on - strand, within CA264_13775at 3219.662 kb on + strand, within CA264_13775at 3219.801 kb on + strand, within CA264_13775at 3219.896 kb on + strand, within CA264_13775at 3219.912 kb on - strand, within CA264_13775at 3219.912 kb on - strand, within CA264_13775at 3219.912 kb on - strand, within CA264_13775at 3219.955 kb on - strand, within CA264_13775at 3219.955 kb on - strand, within CA264_13775at 3219.998 kb on - strand, within CA264_13775at 3219.998 kb on - strand, within CA264_13775at 3219.998 kb on - strand, within CA264_13775at 3220.016 kb on + strand, within CA264_13775at 3220.054 kb on - strand, within CA264_13775at 3220.171 kb on + strandat 3220.171 kb on + strandat 3220.171 kb on + strandat 3220.171 kb on + strandat 3220.171 kb on + strandat 3220.172 kb on - strandat 3220.172 kb on - strandat 3220.172 kb on - strandat 3220.172 kb on - strandat 3220.175 kb on + strandat 3220.176 kb on - strandat 3220.195 kb on - strandat 3220.202 kb on - strandat 3220.295 kb on - strandat 3220.352 kb on - strandat 3220.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,217,722 + CA264_13770 0.54 -0.8
3,217,725 - CA264_13770 0.54 +0.1
3,217,725 - CA264_13770 0.54 -2.5
3,217,933 + -1.0
3,217,934 - -1.3
3,217,938 + -0.7
3,217,938 + -1.2
3,217,939 - -1.5
3,218,032 - -1.9
3,218,057 - -1.8
3,218,057 - -1.2
3,218,057 - -1.0
3,218,060 + -0.2
3,218,060 + -1.0
3,218,061 - -2.0
3,218,061 - -1.1
3,218,062 + -0.2
3,218,067 + -0.7
3,218,068 - -1.0
3,218,078 + -0.2
3,218,078 + +0.6
3,218,082 + -0.1
3,218,102 + +1.8
3,218,136 + +0.4
3,218,189 - -1.8
3,218,197 - -1.5
3,218,248 - -0.8
3,218,293 - -1.1
3,218,298 - -0.4
3,218,298 - +0.6
3,218,310 + +0.0
3,218,311 - -0.6
3,218,316 + +0.2
3,218,317 - -0.8
3,218,317 - -0.4
3,218,321 + +0.4
3,218,322 - -0.7
3,218,328 - -0.3
3,218,401 + -0.1
3,218,434 + -0.7
3,218,434 + -0.6
3,218,434 + +0.1
3,218,469 + -1.1
3,218,487 - +1.8
3,218,488 + -0.6
3,218,489 - -0.5
3,218,489 - -0.0
3,218,536 + +0.0
3,218,552 + -0.5
3,218,552 + -0.1
3,218,588 + -0.1
3,218,589 - -0.6
3,218,631 + -0.9
3,218,698 + +0.2
3,218,699 - -0.3
3,218,699 - -0.3
3,218,708 + -0.3
3,218,708 + -0.2
3,218,708 + -0.3
3,218,708 + -0.0
3,218,709 - +0.1
3,218,709 - +0.7
3,218,709 - -0.8
3,218,709 - -0.1
3,218,710 + -0.1
3,218,710 + -0.0
3,218,711 - -0.4
3,218,765 - +1.8
3,218,768 + -0.4
3,218,769 - -1.6
3,218,769 - -0.4
3,218,796 - +0.6
3,218,803 - +0.0
3,218,928 + CA264_13775 0.14 -1.4
3,218,932 - CA264_13775 0.15 -0.1
3,218,986 + CA264_13775 0.18 +0.1
3,219,020 - CA264_13775 0.20 -1.7
3,219,041 + CA264_13775 0.22 +1.7
3,219,041 + CA264_13775 0.22 +1.1
3,219,042 - CA264_13775 0.22 +0.7
3,219,042 - CA264_13775 0.22 +0.0
3,219,260 + CA264_13775 0.37 +0.3
3,219,261 - CA264_13775 0.37 -0.4
3,219,261 - CA264_13775 0.37 -0.3
3,219,297 - CA264_13775 0.39 -1.7
3,219,307 + CA264_13775 0.40 +0.4
3,219,308 - CA264_13775 0.40 +0.3
3,219,308 - CA264_13775 0.40 -0.0
3,219,308 - CA264_13775 0.40 +0.1
3,219,316 + CA264_13775 0.40 +0.7
3,219,316 + CA264_13775 0.40 -0.6
3,219,316 + CA264_13775 0.40 -0.6
3,219,316 + CA264_13775 0.40 -0.2
3,219,316 + CA264_13775 0.40 +0.6
3,219,316 + CA264_13775 0.40 -0.5
3,219,317 - CA264_13775 0.40 -1.0
3,219,317 - CA264_13775 0.40 +0.1
3,219,344 - CA264_13775 0.42 -0.3
3,219,439 + CA264_13775 0.49 -0.5
3,219,471 + CA264_13775 0.51 -0.4
3,219,474 + CA264_13775 0.51 -0.7
3,219,474 + CA264_13775 0.51 -1.8
3,219,474 + CA264_13775 0.51 -0.7
3,219,482 + CA264_13775 0.51 +1.2
3,219,499 - CA264_13775 0.53 +0.7
3,219,508 + CA264_13775 0.53 +0.2
3,219,509 - CA264_13775 0.53 -0.4
3,219,546 - CA264_13775 0.56 -0.5
3,219,598 - CA264_13775 0.59 +0.2
3,219,598 - CA264_13775 0.59 -0.2
3,219,631 - CA264_13775 0.61 +1.4
3,219,662 + CA264_13775 0.64 +0.3
3,219,801 + CA264_13775 0.73 -0.1
3,219,896 + CA264_13775 0.79 +0.4
3,219,912 - CA264_13775 0.80 +0.4
3,219,912 - CA264_13775 0.80 -0.1
3,219,912 - CA264_13775 0.80 -0.2
3,219,955 - CA264_13775 0.83 -1.2
3,219,955 - CA264_13775 0.83 +0.3
3,219,998 - CA264_13775 0.86 -0.4
3,219,998 - CA264_13775 0.86 -0.3
3,219,998 - CA264_13775 0.86 +0.8
3,220,016 + CA264_13775 0.87 +0.0
3,220,054 - CA264_13775 0.90 +0.0
3,220,171 + -0.2
3,220,171 + -0.3
3,220,171 + +0.1
3,220,171 + +1.1
3,220,171 + -0.6
3,220,172 - +1.5
3,220,172 - +0.2
3,220,172 - +0.1
3,220,172 - +0.2
3,220,175 + +0.2
3,220,176 - +0.3
3,220,195 - -0.2
3,220,202 - -0.6
3,220,295 - -1.0
3,220,352 - +0.4
3,220,360 - +0.8

Or see this region's nucleotide sequence