Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11445 and CA264_11450 are separated by 100 nucleotides CA264_11450 and CA264_11455 are separated by 44 nucleotides
CA264_11445: CA264_11445 - hypothetical protein, at 2,653,724 to 2,654,854
_11445
CA264_11450: CA264_11450 - serine/threonine protein phosphatase, at 2,654,955 to 2,656,037
_11450
CA264_11455: CA264_11455 - RagB/SusD family nutrient uptake outer membrane protein, at 2,656,082 to 2,657,776
_11455
Position (kb)
2654
2655
2656
2657 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2653.975 kb on + strand, within CA264_11445 at 2654.005 kb on + strand, within CA264_11445 at 2654.005 kb on + strand, within CA264_11445 at 2654.018 kb on - strand, within CA264_11445 at 2654.025 kb on + strand, within CA264_11445 at 2654.025 kb on + strand, within CA264_11445 at 2654.026 kb on - strand, within CA264_11445 at 2654.026 kb on - strand, within CA264_11445 at 2654.122 kb on + strand, within CA264_11445 at 2654.123 kb on - strand, within CA264_11445 at 2654.135 kb on + strand, within CA264_11445 at 2654.136 kb on - strand, within CA264_11445 at 2654.140 kb on + strand, within CA264_11445 at 2654.212 kb on + strand, within CA264_11445 at 2654.215 kb on - strand, within CA264_11445 at 2654.236 kb on + strand, within CA264_11445 at 2654.237 kb on - strand, within CA264_11445 at 2654.244 kb on - strand, within CA264_11445 at 2654.260 kb on - strand, within CA264_11445 at 2654.260 kb on - strand, within CA264_11445 at 2654.308 kb on + strand, within CA264_11445 at 2654.309 kb on - strand, within CA264_11445 at 2654.367 kb on + strand, within CA264_11445 at 2654.371 kb on + strand, within CA264_11445 at 2654.376 kb on + strand, within CA264_11445 at 2654.448 kb on + strand, within CA264_11445 at 2654.448 kb on + strand, within CA264_11445 at 2654.453 kb on + strand, within CA264_11445 at 2654.453 kb on + strand, within CA264_11445 at 2654.454 kb on - strand, within CA264_11445 at 2654.454 kb on - strand, within CA264_11445 at 2654.454 kb on - strand, within CA264_11445 at 2654.454 kb on - strand, within CA264_11445 at 2654.536 kb on + strand, within CA264_11445 at 2654.536 kb on + strand, within CA264_11445 at 2654.536 kb on + strand, within CA264_11445 at 2654.537 kb on - strand, within CA264_11445 at 2654.556 kb on + strand, within CA264_11445 at 2654.579 kb on - strand, within CA264_11445 at 2654.646 kb on + strand, within CA264_11445 at 2654.647 kb on - strand, within CA264_11445 at 2654.647 kb on - strand, within CA264_11445 at 2654.647 kb on - strand, within CA264_11445 at 2654.649 kb on + strand, within CA264_11445 at 2654.650 kb on - strand, within CA264_11445 at 2654.799 kb on + strand at 2654.799 kb on + strand at 2654.800 kb on - strand at 2654.800 kb on - strand at 2654.864 kb on + strand at 2654.865 kb on - strand at 2654.946 kb on + strand at 2654.957 kb on - strand at 2654.973 kb on - strand at 2654.973 kb on - strand at 2654.984 kb on - strand at 2655.014 kb on + strand at 2655.014 kb on + strand at 2655.015 kb on - strand at 2655.202 kb on - strand, within CA264_11450 at 2655.202 kb on - strand, within CA264_11450 at 2655.329 kb on + strand, within CA264_11450 at 2655.352 kb on + strand, within CA264_11450 at 2655.361 kb on + strand, within CA264_11450 at 2655.362 kb on - strand, within CA264_11450 at 2655.396 kb on - strand, within CA264_11450 at 2655.398 kb on - strand, within CA264_11450 at 2655.398 kb on - strand, within CA264_11450 at 2655.402 kb on - strand, within CA264_11450 at 2655.402 kb on - strand, within CA264_11450 at 2655.402 kb on - strand, within CA264_11450 at 2655.433 kb on - strand, within CA264_11450 at 2655.483 kb on - strand, within CA264_11450 at 2655.536 kb on - strand, within CA264_11450 at 2655.598 kb on + strand, within CA264_11450 at 2655.626 kb on + strand, within CA264_11450 at 2655.626 kb on + strand, within CA264_11450 at 2655.650 kb on - strand, within CA264_11450 at 2655.650 kb on - strand, within CA264_11450 at 2655.827 kb on + strand, within CA264_11450 at 2655.865 kb on - strand, within CA264_11450 at 2655.867 kb on + strand, within CA264_11450 at 2655.868 kb on - strand, within CA264_11450 at 2655.891 kb on + strand, within CA264_11450 at 2655.891 kb on + strand, within CA264_11450 at 2655.891 kb on + strand, within CA264_11450 at 2655.895 kb on + strand, within CA264_11450 at 2655.896 kb on - strand, within CA264_11450 at 2655.903 kb on + strand, within CA264_11450 at 2655.903 kb on + strand, within CA264_11450 at 2655.903 kb on + strand, within CA264_11450 at 2655.903 kb on + strand, within CA264_11450 at 2655.929 kb on - strand at 2656.044 kb on - strand at 2656.071 kb on + strand at 2656.072 kb on - strand at 2656.072 kb on - strand at 2656.074 kb on - strand at 2656.074 kb on - strand at 2656.074 kb on - strand at 2656.079 kb on + strand at 2656.079 kb on + strand at 2656.080 kb on - strand at 2656.083 kb on + strand at 2656.084 kb on - strand at 2656.084 kb on - strand at 2656.084 kb on - strand at 2656.087 kb on - strand at 2656.104 kb on - strand at 2656.150 kb on - strand at 2656.195 kb on + strand at 2656.260 kb on + strand, within CA264_11455 at 2656.260 kb on + strand, within CA264_11455 at 2656.321 kb on - strand, within CA264_11455 at 2656.495 kb on - strand, within CA264_11455 at 2656.516 kb on + strand, within CA264_11455 at 2656.517 kb on - strand, within CA264_11455 at 2656.557 kb on - strand, within CA264_11455 at 2656.557 kb on - strand, within CA264_11455 at 2656.572 kb on + strand, within CA264_11455 at 2656.580 kb on + strand, within CA264_11455 at 2656.580 kb on + strand, within CA264_11455 at 2656.677 kb on + strand, within CA264_11455 at 2656.678 kb on - strand, within CA264_11455 at 2656.686 kb on + strand, within CA264_11455 at 2656.686 kb on + strand, within CA264_11455 at 2656.687 kb on - strand, within CA264_11455 at 2656.690 kb on + strand, within CA264_11455 at 2656.690 kb on + strand, within CA264_11455 at 2656.690 kb on + strand, within CA264_11455 at 2656.694 kb on + strand, within CA264_11455 at 2656.694 kb on + strand, within CA264_11455 at 2656.695 kb on - strand, within CA264_11455 at 2656.695 kb on - strand, within CA264_11455 at 2656.758 kb on + strand, within CA264_11455 at 2656.759 kb on - strand, within CA264_11455 at 2656.766 kb on - strand, within CA264_11455 at 2656.772 kb on - strand, within CA264_11455 at 2656.773 kb on + strand, within CA264_11455 at 2656.773 kb on + strand, within CA264_11455 at 2656.774 kb on - strand, within CA264_11455 at 2656.774 kb on - strand, within CA264_11455 at 2656.878 kb on - strand, within CA264_11455 at 2656.903 kb on - strand, within CA264_11455
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 2,653,975 + CA264_11445 0.22 +0.1 2,654,005 + CA264_11445 0.25 -0.5 2,654,005 + CA264_11445 0.25 -1.1 2,654,018 - CA264_11445 0.26 +0.6 2,654,025 + CA264_11445 0.27 -0.6 2,654,025 + CA264_11445 0.27 -0.2 2,654,026 - CA264_11445 0.27 -0.6 2,654,026 - CA264_11445 0.27 +0.0 2,654,122 + CA264_11445 0.35 +0.2 2,654,123 - CA264_11445 0.35 -1.0 2,654,135 + CA264_11445 0.36 -0.4 2,654,136 - CA264_11445 0.36 -0.5 2,654,140 + CA264_11445 0.37 -0.3 2,654,212 + CA264_11445 0.43 -0.4 2,654,215 - CA264_11445 0.43 -0.1 2,654,236 + CA264_11445 0.45 -0.7 2,654,237 - CA264_11445 0.45 -0.6 2,654,244 - CA264_11445 0.46 -0.7 2,654,260 - CA264_11445 0.47 -0.8 2,654,260 - CA264_11445 0.47 -0.6 2,654,308 + CA264_11445 0.52 -1.4 2,654,309 - CA264_11445 0.52 +0.0 2,654,367 + CA264_11445 0.57 -0.9 2,654,371 + CA264_11445 0.57 -0.7 2,654,376 + CA264_11445 0.58 -0.6 2,654,448 + CA264_11445 0.64 -0.9 2,654,448 + CA264_11445 0.64 -0.4 2,654,453 + CA264_11445 0.64 -0.5 2,654,453 + CA264_11445 0.64 -0.6 2,654,454 - CA264_11445 0.65 -1.3 2,654,454 - CA264_11445 0.65 -0.6 2,654,454 - CA264_11445 0.65 +1.8 2,654,454 - CA264_11445 0.65 +0.1 2,654,536 + CA264_11445 0.72 -0.6 2,654,536 + CA264_11445 0.72 +0.7 2,654,536 + CA264_11445 0.72 -0.6 2,654,537 - CA264_11445 0.72 -0.1 2,654,556 + CA264_11445 0.74 -0.6 2,654,579 - CA264_11445 0.76 +0.5 2,654,646 + CA264_11445 0.82 -0.7 2,654,647 - CA264_11445 0.82 +0.2 2,654,647 - CA264_11445 0.82 -0.3 2,654,647 - CA264_11445 0.82 -0.4 2,654,649 + CA264_11445 0.82 -0.3 2,654,650 - CA264_11445 0.82 +0.1 2,654,799 + +0.3 2,654,799 + -0.4 2,654,800 - -0.0 2,654,800 - -1.1 2,654,864 + +0.4 2,654,865 - -0.2 2,654,946 + -0.6 2,654,957 - -0.3 2,654,973 - -0.9 2,654,973 - -0.4 2,654,984 - +0.6 2,655,014 + -1.0 2,655,014 + -0.3 2,655,015 - -0.4 2,655,202 - CA264_11450 0.23 -0.9 2,655,202 - CA264_11450 0.23 -0.2 2,655,329 + CA264_11450 0.35 +0.2 2,655,352 + CA264_11450 0.37 +0.9 2,655,361 + CA264_11450 0.37 +0.1 2,655,362 - CA264_11450 0.38 -0.0 2,655,396 - CA264_11450 0.41 -1.8 2,655,398 - CA264_11450 0.41 -0.4 2,655,398 - CA264_11450 0.41 +0.9 2,655,402 - CA264_11450 0.41 -0.2 2,655,402 - CA264_11450 0.41 +0.0 2,655,402 - CA264_11450 0.41 -0.3 2,655,433 - CA264_11450 0.44 -0.7 2,655,483 - CA264_11450 0.49 -0.5 2,655,536 - CA264_11450 0.54 +0.3 2,655,598 + CA264_11450 0.59 -0.9 2,655,626 + CA264_11450 0.62 +0.2 2,655,626 + CA264_11450 0.62 -1.3 2,655,650 - CA264_11450 0.64 +0.1 2,655,650 - CA264_11450 0.64 -1.3 2,655,827 + CA264_11450 0.81 +0.6 2,655,865 - CA264_11450 0.84 +0.0 2,655,867 + CA264_11450 0.84 -0.3 2,655,868 - CA264_11450 0.84 -0.1 2,655,891 + CA264_11450 0.86 -0.5 2,655,891 + CA264_11450 0.86 +0.1 2,655,891 + CA264_11450 0.86 +0.3 2,655,895 + CA264_11450 0.87 -0.4 2,655,896 - CA264_11450 0.87 -0.5 2,655,903 + CA264_11450 0.88 +0.2 2,655,903 + CA264_11450 0.88 -0.6 2,655,903 + CA264_11450 0.88 -0.9 2,655,903 + CA264_11450 0.88 -0.8 2,655,929 - +1.9 2,656,044 - -0.7 2,656,071 + -0.8 2,656,072 - -0.0 2,656,072 - -0.3 2,656,074 - -0.1 2,656,074 - -0.1 2,656,074 - -0.5 2,656,079 + -0.3 2,656,079 + -0.9 2,656,080 - -0.5 2,656,083 + -0.3 2,656,084 - -0.1 2,656,084 - -0.3 2,656,084 - +2.3 2,656,087 - +0.1 2,656,104 - -0.1 2,656,150 - -0.8 2,656,195 + -0.3 2,656,260 + CA264_11455 0.11 +0.0 2,656,260 + CA264_11455 0.11 +1.2 2,656,321 - CA264_11455 0.14 +1.2 2,656,495 - CA264_11455 0.24 -1.4 2,656,516 + CA264_11455 0.26 +1.7 2,656,517 - CA264_11455 0.26 -0.6 2,656,557 - CA264_11455 0.28 +0.5 2,656,557 - CA264_11455 0.28 -0.7 2,656,572 + CA264_11455 0.29 +0.3 2,656,580 + CA264_11455 0.29 +0.1 2,656,580 + CA264_11455 0.29 -0.5 2,656,677 + CA264_11455 0.35 +1.3 2,656,678 - CA264_11455 0.35 -0.1 2,656,686 + CA264_11455 0.36 +0.1 2,656,686 + CA264_11455 0.36 -0.0 2,656,687 - CA264_11455 0.36 -0.0 2,656,690 + CA264_11455 0.36 -0.6 2,656,690 + CA264_11455 0.36 +1.0 2,656,690 + CA264_11455 0.36 -0.5 2,656,694 + CA264_11455 0.36 -0.1 2,656,694 + CA264_11455 0.36 +0.1 2,656,695 - CA264_11455 0.36 +0.4 2,656,695 - CA264_11455 0.36 +0.4 2,656,758 + CA264_11455 0.40 +0.1 2,656,759 - CA264_11455 0.40 +0.1 2,656,766 - CA264_11455 0.40 -1.6 2,656,772 - CA264_11455 0.41 +1.1 2,656,773 + CA264_11455 0.41 -0.3 2,656,773 + CA264_11455 0.41 -0.3 2,656,774 - CA264_11455 0.41 +0.7 2,656,774 - CA264_11455 0.41 +0.8 2,656,878 - CA264_11455 0.47 -0.5 2,656,903 - CA264_11455 0.48 -0.3
Or see this region's nucleotide sequence