Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10915

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10910 and CA264_10915 are separated by 21 nucleotidesCA264_10915 and CA264_10920 are separated by 234 nucleotides CA264_10910: CA264_10910 - phytoene dehydrogenase, at 2,519,133 to 2,520,629 _10910 CA264_10915: CA264_10915 - RNA polymerase subunit sigma, at 2,520,651 to 2,521,166 _10915 CA264_10920: CA264_10920 - helix-turn-helix-type transcriptional regulator, at 2,521,401 to 2,522,276 _10920 Position (kb) 2520 2521 2522Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2519.695 kb on + strand, within CA264_10910at 2519.696 kb on - strand, within CA264_10910at 2519.900 kb on - strand, within CA264_10910at 2520.001 kb on + strand, within CA264_10910at 2520.001 kb on + strand, within CA264_10910at 2520.002 kb on - strand, within CA264_10910at 2520.016 kb on + strand, within CA264_10910at 2520.016 kb on + strand, within CA264_10910at 2520.016 kb on + strand, within CA264_10910at 2520.016 kb on + strand, within CA264_10910at 2520.078 kb on + strand, within CA264_10910at 2520.110 kb on + strand, within CA264_10910at 2520.174 kb on - strand, within CA264_10910at 2520.174 kb on - strand, within CA264_10910at 2520.200 kb on + strand, within CA264_10910at 2520.215 kb on + strand, within CA264_10910at 2520.230 kb on - strand, within CA264_10910at 2520.235 kb on + strand, within CA264_10910at 2520.235 kb on + strand, within CA264_10910at 2520.236 kb on - strand, within CA264_10910at 2520.236 kb on - strand, within CA264_10910at 2520.364 kb on + strand, within CA264_10910at 2520.365 kb on - strand, within CA264_10910at 2520.391 kb on + strand, within CA264_10910at 2520.423 kb on - strand, within CA264_10910at 2520.427 kb on + strand, within CA264_10910at 2520.428 kb on - strand, within CA264_10910at 2520.475 kb on + strand, within CA264_10910at 2520.480 kb on - strandat 2520.480 kb on - strandat 2520.480 kb on - strandat 2520.551 kb on - strandat 2520.613 kb on - strandat 2520.613 kb on - strandat 2520.629 kb on + strandat 2520.629 kb on + strandat 2520.629 kb on + strandat 2520.630 kb on - strandat 2520.634 kb on - strandat 2520.670 kb on - strandat 2520.708 kb on + strand, within CA264_10915at 2520.735 kb on + strand, within CA264_10915at 2520.735 kb on + strand, within CA264_10915at 2520.735 kb on + strand, within CA264_10915at 2520.735 kb on + strand, within CA264_10915at 2520.764 kb on - strand, within CA264_10915at 2520.778 kb on + strand, within CA264_10915at 2520.779 kb on - strand, within CA264_10915at 2520.779 kb on - strand, within CA264_10915at 2520.779 kb on - strand, within CA264_10915at 2520.781 kb on + strand, within CA264_10915at 2520.781 kb on + strand, within CA264_10915at 2520.782 kb on - strand, within CA264_10915at 2520.782 kb on - strand, within CA264_10915at 2520.782 kb on - strand, within CA264_10915at 2520.894 kb on - strand, within CA264_10915at 2520.897 kb on - strand, within CA264_10915at 2520.901 kb on + strand, within CA264_10915at 2520.951 kb on - strand, within CA264_10915at 2520.951 kb on - strand, within CA264_10915at 2520.955 kb on + strand, within CA264_10915at 2520.956 kb on - strand, within CA264_10915at 2520.956 kb on - strand, within CA264_10915at 2520.959 kb on + strand, within CA264_10915at 2520.960 kb on - strand, within CA264_10915at 2520.960 kb on - strand, within CA264_10915at 2520.962 kb on + strand, within CA264_10915at 2520.963 kb on - strand, within CA264_10915at 2521.095 kb on + strand, within CA264_10915at 2521.182 kb on - strandat 2521.188 kb on - strandat 2521.189 kb on + strandat 2521.189 kb on + strandat 2521.190 kb on - strandat 2521.407 kb on - strandat 2521.492 kb on + strand, within CA264_10920at 2521.493 kb on - strand, within CA264_10920at 2521.493 kb on - strand, within CA264_10920at 2521.498 kb on + strand, within CA264_10920at 2521.499 kb on - strand, within CA264_10920at 2521.499 kb on - strand, within CA264_10920at 2521.502 kb on + strand, within CA264_10920at 2521.502 kb on + strand, within CA264_10920at 2521.503 kb on - strand, within CA264_10920at 2521.540 kb on + strand, within CA264_10920at 2521.590 kb on - strand, within CA264_10920at 2521.590 kb on - strand, within CA264_10920at 2521.687 kb on + strand, within CA264_10920at 2521.687 kb on + strand, within CA264_10920at 2521.688 kb on - strand, within CA264_10920at 2521.688 kb on - strand, within CA264_10920at 2521.688 kb on - strand, within CA264_10920at 2521.736 kb on - strand, within CA264_10920at 2521.744 kb on + strand, within CA264_10920at 2521.745 kb on - strand, within CA264_10920at 2521.822 kb on - strand, within CA264_10920at 2521.844 kb on + strand, within CA264_10920at 2522.034 kb on + strand, within CA264_10920at 2522.085 kb on - strand, within CA264_10920at 2522.096 kb on - strand, within CA264_10920at 2522.120 kb on + strand, within CA264_10920at 2522.120 kb on + strand, within CA264_10920at 2522.121 kb on - strand, within CA264_10920at 2522.155 kb on + strand, within CA264_10920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,519,695 + CA264_10910 0.38 +0.2
2,519,696 - CA264_10910 0.38 +0.1
2,519,900 - CA264_10910 0.51 +0.3
2,520,001 + CA264_10910 0.58 +0.5
2,520,001 + CA264_10910 0.58 +2.1
2,520,002 - CA264_10910 0.58 +0.4
2,520,016 + CA264_10910 0.59 +0.4
2,520,016 + CA264_10910 0.59 +1.7
2,520,016 + CA264_10910 0.59 +0.5
2,520,016 + CA264_10910 0.59 -0.2
2,520,078 + CA264_10910 0.63 +0.4
2,520,110 + CA264_10910 0.65 +0.5
2,520,174 - CA264_10910 0.70 -1.1
2,520,174 - CA264_10910 0.70 +0.3
2,520,200 + CA264_10910 0.71 -0.7
2,520,215 + CA264_10910 0.72 +0.5
2,520,230 - CA264_10910 0.73 +0.5
2,520,235 + CA264_10910 0.74 +1.6
2,520,235 + CA264_10910 0.74 +0.4
2,520,236 - CA264_10910 0.74 +0.5
2,520,236 - CA264_10910 0.74 +0.2
2,520,364 + CA264_10910 0.82 +0.1
2,520,365 - CA264_10910 0.82 +0.8
2,520,391 + CA264_10910 0.84 +0.0
2,520,423 - CA264_10910 0.86 -0.5
2,520,427 + CA264_10910 0.86 +0.7
2,520,428 - CA264_10910 0.87 +0.5
2,520,475 + CA264_10910 0.90 +0.6
2,520,480 - +0.2
2,520,480 - +0.8
2,520,480 - +0.4
2,520,551 - -0.9
2,520,613 - -0.2
2,520,613 - +0.5
2,520,629 + -0.8
2,520,629 + -1.3
2,520,629 + -0.2
2,520,630 - +1.2
2,520,634 - +0.4
2,520,670 - -1.7
2,520,708 + CA264_10915 0.11 -2.8
2,520,735 + CA264_10915 0.16 -0.8
2,520,735 + CA264_10915 0.16 -0.9
2,520,735 + CA264_10915 0.16 -0.2
2,520,735 + CA264_10915 0.16 -1.1
2,520,764 - CA264_10915 0.22 +0.4
2,520,778 + CA264_10915 0.25 -5.1
2,520,779 - CA264_10915 0.25 -1.1
2,520,779 - CA264_10915 0.25 -2.4
2,520,779 - CA264_10915 0.25 -3.3
2,520,781 + CA264_10915 0.25 -1.8
2,520,781 + CA264_10915 0.25 -0.4
2,520,782 - CA264_10915 0.25 +1.4
2,520,782 - CA264_10915 0.25 -0.4
2,520,782 - CA264_10915 0.25 -0.5
2,520,894 - CA264_10915 0.47 -2.4
2,520,897 - CA264_10915 0.48 -1.8
2,520,901 + CA264_10915 0.48 -2.8
2,520,951 - CA264_10915 0.58 -3.6
2,520,951 - CA264_10915 0.58 -2.6
2,520,955 + CA264_10915 0.59 -2.3
2,520,956 - CA264_10915 0.59 +0.1
2,520,956 - CA264_10915 0.59 -3.4
2,520,959 + CA264_10915 0.60 -2.7
2,520,960 - CA264_10915 0.60 -1.3
2,520,960 - CA264_10915 0.60 -2.0
2,520,962 + CA264_10915 0.60 -3.5
2,520,963 - CA264_10915 0.60 -2.1
2,521,095 + CA264_10915 0.86 -2.8
2,521,182 - +1.7
2,521,188 - +0.2
2,521,189 + -1.2
2,521,189 + -1.3
2,521,190 - +0.7
2,521,407 - +1.2
2,521,492 + CA264_10920 0.10 +2.6
2,521,493 - CA264_10920 0.11 +2.1
2,521,493 - CA264_10920 0.11 +2.9
2,521,498 + CA264_10920 0.11 +2.0
2,521,499 - CA264_10920 0.11 +2.4
2,521,499 - CA264_10920 0.11 +1.6
2,521,502 + CA264_10920 0.12 +2.3
2,521,502 + CA264_10920 0.12 +1.2
2,521,503 - CA264_10920 0.12 +2.5
2,521,540 + CA264_10920 0.16 +2.4
2,521,590 - CA264_10920 0.22 +1.8
2,521,590 - CA264_10920 0.22 +2.8
2,521,687 + CA264_10920 0.33 +2.3
2,521,687 + CA264_10920 0.33 +2.2
2,521,688 - CA264_10920 0.33 +2.9
2,521,688 - CA264_10920 0.33 +2.6
2,521,688 - CA264_10920 0.33 +1.9
2,521,736 - CA264_10920 0.38 +2.3
2,521,744 + CA264_10920 0.39 +1.3
2,521,745 - CA264_10920 0.39 +2.8
2,521,822 - CA264_10920 0.48 +2.1
2,521,844 + CA264_10920 0.51 +2.1
2,522,034 + CA264_10920 0.72 +3.0
2,522,085 - CA264_10920 0.78 +3.0
2,522,096 - CA264_10920 0.79 +2.5
2,522,120 + CA264_10920 0.82 +2.7
2,522,120 + CA264_10920 0.82 +2.4
2,522,121 - CA264_10920 0.82 +2.4
2,522,155 + CA264_10920 0.86 +2.3

Or see this region's nucleotide sequence