Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10650

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10645 and CA264_10650 are separated by 300 nucleotidesCA264_10650 and CA264_10655 are separated by 86 nucleotidesCA264_10655 and CA264_10660 are separated by 158 nucleotides CA264_10645: CA264_10645 - hypothetical protein, at 2,460,003 to 2,461,289 _10645 CA264_10650: CA264_10650 - hypothetical protein, at 2,461,590 to 2,462,015 _10650 CA264_10655: CA264_10655 - hypothetical protein, at 2,462,102 to 2,462,824 _10655 CA264_10660: CA264_10660 - hypothetical protein, at 2,462,983 to 2,463,375 _10660 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -2 -1 0 1 2at 2460.639 kb on + strand, within CA264_10645at 2460.642 kb on + strand, within CA264_10645at 2460.650 kb on + strand, within CA264_10645at 2460.651 kb on - strand, within CA264_10645at 2460.707 kb on + strand, within CA264_10645at 2460.753 kb on + strand, within CA264_10645at 2460.848 kb on + strand, within CA264_10645at 2460.852 kb on + strand, within CA264_10645at 2460.852 kb on + strand, within CA264_10645at 2460.870 kb on + strand, within CA264_10645at 2460.892 kb on + strand, within CA264_10645at 2460.938 kb on + strand, within CA264_10645at 2460.938 kb on + strand, within CA264_10645at 2460.961 kb on - strand, within CA264_10645at 2461.130 kb on + strand, within CA264_10645at 2461.165 kb on + strandat 2461.231 kb on + strandat 2461.231 kb on + strandat 2461.232 kb on - strandat 2461.286 kb on - strandat 2461.286 kb on - strandat 2461.310 kb on + strandat 2461.311 kb on - strandat 2461.311 kb on - strandat 2461.460 kb on + strandat 2461.461 kb on - strandat 2461.487 kb on - strandat 2461.508 kb on + strandat 2461.567 kb on + strandat 2461.572 kb on + strandat 2461.590 kb on - strandat 2461.604 kb on - strandat 2461.708 kb on + strand, within CA264_10650at 2461.728 kb on - strand, within CA264_10650at 2461.749 kb on - strand, within CA264_10650at 2461.754 kb on - strand, within CA264_10650at 2461.774 kb on + strand, within CA264_10650at 2461.807 kb on + strand, within CA264_10650at 2461.808 kb on - strand, within CA264_10650at 2461.817 kb on - strand, within CA264_10650at 2461.817 kb on - strand, within CA264_10650at 2461.871 kb on - strand, within CA264_10650at 2461.875 kb on - strand, within CA264_10650at 2461.944 kb on + strand, within CA264_10650at 2461.944 kb on + strand, within CA264_10650at 2461.944 kb on + strand, within CA264_10650at 2461.946 kb on + strand, within CA264_10650at 2461.982 kb on - strandat 2462.013 kb on + strandat 2462.032 kb on - strandat 2462.115 kb on + strandat 2462.184 kb on + strand, within CA264_10655at 2462.276 kb on + strand, within CA264_10655at 2462.301 kb on + strand, within CA264_10655at 2462.301 kb on + strand, within CA264_10655at 2462.302 kb on - strand, within CA264_10655at 2462.350 kb on - strand, within CA264_10655at 2462.390 kb on - strand, within CA264_10655at 2462.408 kb on + strand, within CA264_10655at 2462.422 kb on + strand, within CA264_10655at 2462.423 kb on - strand, within CA264_10655at 2462.454 kb on + strand, within CA264_10655at 2462.455 kb on - strand, within CA264_10655at 2462.518 kb on - strand, within CA264_10655at 2462.518 kb on - strand, within CA264_10655at 2462.518 kb on - strand, within CA264_10655at 2462.730 kb on + strand, within CA264_10655at 2462.731 kb on - strand, within CA264_10655at 2462.731 kb on - strand, within CA264_10655at 2462.736 kb on + strand, within CA264_10655at 2462.752 kb on + strandat 2462.770 kb on - strandat 2462.818 kb on + strandat 2462.818 kb on + strandat 2462.819 kb on - strandat 2462.849 kb on - strandat 2462.849 kb on - strandat 2462.851 kb on - strandat 2462.854 kb on + strandat 2462.855 kb on - strandat 2462.855 kb on - strandat 2462.855 kb on - strandat 2462.855 kb on - strandat 2462.927 kb on + strandat 2462.929 kb on + strandat 2462.959 kb on - strandat 2463.012 kb on - strandat 2463.015 kb on - strandat 2463.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,460,639 + CA264_10645 0.49 -0.7
2,460,642 + CA264_10645 0.50 -0.4
2,460,650 + CA264_10645 0.50 +0.5
2,460,651 - CA264_10645 0.50 -1.6
2,460,707 + CA264_10645 0.55 +0.2
2,460,753 + CA264_10645 0.58 -0.1
2,460,848 + CA264_10645 0.66 -0.7
2,460,852 + CA264_10645 0.66 +0.2
2,460,852 + CA264_10645 0.66 +0.1
2,460,870 + CA264_10645 0.67 -0.1
2,460,892 + CA264_10645 0.69 +0.2
2,460,938 + CA264_10645 0.73 -0.1
2,460,938 + CA264_10645 0.73 +0.6
2,460,961 - CA264_10645 0.74 +0.0
2,461,130 + CA264_10645 0.88 -0.2
2,461,165 + -0.4
2,461,231 + +0.2
2,461,231 + -1.1
2,461,232 - -0.9
2,461,286 - -1.8
2,461,286 - -0.3
2,461,310 + +0.2
2,461,311 - +0.1
2,461,311 - -1.0
2,461,460 + -0.9
2,461,461 - +1.4
2,461,487 - -0.3
2,461,508 + -0.7
2,461,567 + -1.6
2,461,572 + -0.8
2,461,590 - -1.4
2,461,604 - -1.1
2,461,708 + CA264_10650 0.28 -0.8
2,461,728 - CA264_10650 0.32 -0.7
2,461,749 - CA264_10650 0.37 -1.0
2,461,754 - CA264_10650 0.38 -0.1
2,461,774 + CA264_10650 0.43 -0.9
2,461,807 + CA264_10650 0.51 -0.6
2,461,808 - CA264_10650 0.51 -0.4
2,461,817 - CA264_10650 0.53 -0.0
2,461,817 - CA264_10650 0.53 -0.7
2,461,871 - CA264_10650 0.66 +0.6
2,461,875 - CA264_10650 0.67 +0.4
2,461,944 + CA264_10650 0.83 -0.1
2,461,944 + CA264_10650 0.83 -0.7
2,461,944 + CA264_10650 0.83 -0.6
2,461,946 + CA264_10650 0.84 -0.5
2,461,982 - -0.2
2,462,013 + -0.7
2,462,032 - -0.2
2,462,115 + -2.0
2,462,184 + CA264_10655 0.11 +1.1
2,462,276 + CA264_10655 0.24 -0.3
2,462,301 + CA264_10655 0.28 -0.3
2,462,301 + CA264_10655 0.28 -0.3
2,462,302 - CA264_10655 0.28 +0.6
2,462,350 - CA264_10655 0.34 -1.0
2,462,390 - CA264_10655 0.40 -0.8
2,462,408 + CA264_10655 0.42 +0.1
2,462,422 + CA264_10655 0.44 -0.5
2,462,423 - CA264_10655 0.44 -0.4
2,462,454 + CA264_10655 0.49 +0.2
2,462,455 - CA264_10655 0.49 +0.9
2,462,518 - CA264_10655 0.58 -0.1
2,462,518 - CA264_10655 0.58 +1.3
2,462,518 - CA264_10655 0.58 +0.1
2,462,730 + CA264_10655 0.87 -0.8
2,462,731 - CA264_10655 0.87 -0.1
2,462,731 - CA264_10655 0.87 +1.9
2,462,736 + CA264_10655 0.88 +0.5
2,462,752 + +0.1
2,462,770 - -0.1
2,462,818 + -0.8
2,462,818 + +0.5
2,462,819 - +1.2
2,462,849 - -1.1
2,462,849 - -0.2
2,462,851 - -1.2
2,462,854 + -0.9
2,462,855 - -0.1
2,462,855 - +0.6
2,462,855 - +0.6
2,462,855 - +0.2
2,462,927 + +0.0
2,462,929 + -1.1
2,462,959 - -0.4
2,463,012 - -0.9
2,463,015 - -0.3
2,463,015 - +1.3

Or see this region's nucleotide sequence