Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10170 and CA264_10175 are separated by 143 nucleotides CA264_10175 and CA264_10180 are separated by 148 nucleotides CA264_10180 and CA264_10185 overlap by 4 nucleotides
CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268
_10170
CA264_10175: CA264_10175 - hypothetical protein, at 2,365,412 to 2,365,903
_10175
CA264_10180: CA264_10180 - SOS mutagenesis and repair protein UmuC, at 2,366,052 to 2,367,320
_10180
CA264_10185: CA264_10185 - hypothetical protein, at 2,367,317 to 2,367,778
_10185
Position (kb)
2366
2367
2368 Strain fitness (log2 ratio)
-1
0
1
2 at 2365.255 kb on + strand at 2365.256 kb on - strand at 2365.264 kb on - strand at 2365.264 kb on - strand at 2365.270 kb on + strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.279 kb on + strand at 2365.351 kb on + strand at 2365.352 kb on - strand at 2365.708 kb on - strand, within CA264_10175 at 2365.796 kb on + strand, within CA264_10175 at 2365.796 kb on + strand, within CA264_10175 at 2365.802 kb on - strand, within CA264_10175 at 2365.818 kb on + strand, within CA264_10175 at 2365.825 kb on + strand, within CA264_10175 at 2365.826 kb on - strand, within CA264_10175 at 2365.826 kb on - strand, within CA264_10175 at 2365.870 kb on + strand at 2365.928 kb on + strand at 2365.968 kb on + strand at 2365.999 kb on - strand at 2366.089 kb on + strand at 2366.483 kb on + strand, within CA264_10180 at 2366.484 kb on - strand, within CA264_10180 at 2366.484 kb on - strand, within CA264_10180 at 2366.484 kb on - strand, within CA264_10180 at 2366.509 kb on + strand, within CA264_10180 at 2366.509 kb on + strand, within CA264_10180 at 2366.509 kb on + strand, within CA264_10180 at 2366.510 kb on - strand, within CA264_10180 at 2366.546 kb on - strand, within CA264_10180 at 2366.550 kb on - strand, within CA264_10180 at 2366.889 kb on - strand, within CA264_10180 at 2366.889 kb on - strand, within CA264_10180 at 2367.020 kb on - strand, within CA264_10180 at 2367.027 kb on + strand, within CA264_10180 at 2367.091 kb on + strand, within CA264_10180 at 2367.092 kb on - strand, within CA264_10180 at 2367.281 kb on - strand at 2367.281 kb on - strand at 2367.281 kb on - strand at 2367.281 kb on - strand at 2367.480 kb on - strand, within CA264_10185 at 2367.544 kb on + strand, within CA264_10185 at 2367.545 kb on - strand, within CA264_10185 at 2367.545 kb on - strand, within CA264_10185 at 2367.545 kb on - strand, within CA264_10185 at 2367.559 kb on + strand, within CA264_10185 at 2367.612 kb on + strand, within CA264_10185 at 2367.642 kb on + strand, within CA264_10185 at 2367.642 kb on + strand, within CA264_10185 at 2367.822 kb on - strand at 2367.953 kb on - strand at 2368.020 kb on + strand at 2368.035 kb on + strand at 2368.044 kb on - strand at 2368.045 kb on + strand at 2368.051 kb on - strand at 2368.071 kb on - strand at 2368.084 kb on + strand at 2368.095 kb on + strand at 2368.105 kb on + strand at 2368.106 kb on - strand at 2368.130 kb on - strand at 2368.148 kb on + strand at 2368.197 kb on - strand at 2368.224 kb on + strand at 2368.225 kb on - strand at 2368.236 kb on - strand at 2368.249 kb on + strand at 2368.249 kb on + strand at 2368.250 kb on - strand at 2368.250 kb on - strand at 2368.280 kb on + strand at 2368.280 kb on + strand at 2368.280 kb on + strand at 2368.281 kb on - strand at 2368.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 2,365,255 + -0.4 2,365,256 - -0.1 2,365,264 - +0.0 2,365,264 - -1.0 2,365,270 + -0.3 2,365,271 - +1.9 2,365,271 - +0.3 2,365,271 - -0.5 2,365,271 - -0.0 2,365,279 + -0.9 2,365,351 + +0.1 2,365,352 - -0.1 2,365,708 - CA264_10175 0.60 -1.2 2,365,796 + CA264_10175 0.78 -0.8 2,365,796 + CA264_10175 0.78 -0.4 2,365,802 - CA264_10175 0.79 -0.7 2,365,818 + CA264_10175 0.83 -1.0 2,365,825 + CA264_10175 0.84 +0.9 2,365,826 - CA264_10175 0.84 -0.1 2,365,826 - CA264_10175 0.84 -0.0 2,365,870 + -0.5 2,365,928 + -0.2 2,365,968 + +0.3 2,365,999 - -0.2 2,366,089 + +0.1 2,366,483 + CA264_10180 0.34 -1.7 2,366,484 - CA264_10180 0.34 +2.3 2,366,484 - CA264_10180 0.34 -0.4 2,366,484 - CA264_10180 0.34 +0.3 2,366,509 + CA264_10180 0.36 -0.2 2,366,509 + CA264_10180 0.36 -0.2 2,366,509 + CA264_10180 0.36 +0.1 2,366,510 - CA264_10180 0.36 +0.7 2,366,546 - CA264_10180 0.39 -0.2 2,366,550 - CA264_10180 0.39 +0.3 2,366,889 - CA264_10180 0.66 +0.1 2,366,889 - CA264_10180 0.66 +0.1 2,367,020 - CA264_10180 0.76 -0.0 2,367,027 + CA264_10180 0.77 +0.2 2,367,091 + CA264_10180 0.82 +0.4 2,367,092 - CA264_10180 0.82 +0.5 2,367,281 - +0.7 2,367,281 - -0.9 2,367,281 - +0.5 2,367,281 - +0.7 2,367,480 - CA264_10185 0.35 +0.4 2,367,544 + CA264_10185 0.49 -0.7 2,367,545 - CA264_10185 0.49 +0.1 2,367,545 - CA264_10185 0.49 -0.1 2,367,545 - CA264_10185 0.49 +0.5 2,367,559 + CA264_10185 0.52 +0.3 2,367,612 + CA264_10185 0.64 +0.1 2,367,642 + CA264_10185 0.70 -0.3 2,367,642 + CA264_10185 0.70 +0.5 2,367,822 - -0.1 2,367,953 - -0.7 2,368,020 + +0.8 2,368,035 + +0.5 2,368,044 - +0.7 2,368,045 + +0.9 2,368,051 - -0.1 2,368,071 - -0.6 2,368,084 + +0.1 2,368,095 + -0.9 2,368,105 + -1.0 2,368,106 - +0.4 2,368,130 - -0.2 2,368,148 + -0.7 2,368,197 - -0.4 2,368,224 + +0.5 2,368,225 - -0.0 2,368,236 - -1.0 2,368,249 + -0.7 2,368,249 + -0.2 2,368,250 - -0.2 2,368,250 - +0.7 2,368,280 + -0.4 2,368,280 + -0.3 2,368,280 + -0.1 2,368,281 - -0.0 2,368,300 - -0.1
Or see this region's nucleotide sequence