Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09835

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_09830 and CA264_09835 are separated by 288 nucleotides CA264_09830: CA264_09830 - hypothetical protein, at 2,284,531 to 2,287,704 _09830 CA264_09835: CA264_09835 - hypothetical protein, at 2,287,993 to 2,288,205 _09835 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -2 -1 0 1 2at 2287.033 kb on + strand, within CA264_09830at 2287.042 kb on + strand, within CA264_09830at 2287.179 kb on - strand, within CA264_09830at 2287.210 kb on + strand, within CA264_09830at 2287.211 kb on - strand, within CA264_09830at 2287.211 kb on - strand, within CA264_09830at 2287.215 kb on - strand, within CA264_09830at 2287.238 kb on + strand, within CA264_09830at 2287.276 kb on - strand, within CA264_09830at 2287.298 kb on + strand, within CA264_09830at 2287.319 kb on + strand, within CA264_09830at 2287.319 kb on + strand, within CA264_09830at 2287.320 kb on - strand, within CA264_09830at 2287.320 kb on - strand, within CA264_09830at 2287.322 kb on + strandat 2287.322 kb on + strand, within CA264_09830at 2287.323 kb on - strand, within CA264_09830at 2287.444 kb on - strandat 2287.444 kb on - strandat 2287.451 kb on + strandat 2287.454 kb on + strandat 2287.455 kb on - strandat 2287.460 kb on + strandat 2287.460 kb on + strandat 2287.461 kb on - strandat 2287.470 kb on + strandat 2287.628 kb on - strandat 2287.670 kb on - strandat 2287.676 kb on + strandat 2287.680 kb on - strandat 2287.684 kb on + strandat 2287.684 kb on + strandat 2287.709 kb on - strandat 2287.719 kb on + strandat 2287.994 kb on + strandat 2287.994 kb on + strandat 2287.994 kb on + strandat 2287.995 kb on - strandat 2288.416 kb on + strandat 2288.416 kb on + strandat 2288.429 kb on - strandat 2288.433 kb on - strandat 2288.453 kb on + strandat 2288.453 kb on + strandat 2288.453 kb on + strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.661 kb on + strandat 2288.679 kb on + strandat 2288.825 kb on + strandat 2288.826 kb on - strandat 2288.844 kb on + strandat 2288.855 kb on + strandat 2288.856 kb on - strandat 2288.856 kb on - strandat 2288.856 kb on - strandat 2288.911 kb on - strandat 2288.920 kb on + strandat 2288.921 kb on - strandat 2288.947 kb on - strandat 2289.108 kb on + strandat 2289.108 kb on + strandat 2289.109 kb on - strandat 2289.109 kb on - strandat 2289.109 kb on - strandat 2289.116 kb on - strandat 2289.120 kb on + strandat 2289.142 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
2,287,033 + CA264_09830 0.79 +0.1
2,287,042 + CA264_09830 0.79 -0.1
2,287,179 - CA264_09830 0.83 -0.0
2,287,210 + CA264_09830 0.84 +0.8
2,287,211 - CA264_09830 0.84 +0.4
2,287,211 - CA264_09830 0.84 +0.5
2,287,215 - CA264_09830 0.85 -1.5
2,287,238 + CA264_09830 0.85 +0.2
2,287,276 - CA264_09830 0.86 +0.4
2,287,298 + CA264_09830 0.87 +0.9
2,287,319 + CA264_09830 0.88 +1.5
2,287,319 + CA264_09830 0.88 +0.2
2,287,320 - CA264_09830 0.88 +1.0
2,287,320 - CA264_09830 0.88 +1.0
2,287,322 + +0.1
2,287,322 + CA264_09830 0.88 +0.8
2,287,323 - CA264_09830 0.88 +0.8
2,287,444 - +2.2
2,287,444 - -0.3
2,287,451 + +0.2
2,287,454 + +0.0
2,287,455 - +0.0
2,287,460 + -0.5
2,287,460 + +0.5
2,287,461 - -0.7
2,287,470 + +0.8
2,287,628 - -0.0
2,287,670 - +0.9
2,287,676 + +0.7
2,287,680 - +1.2
2,287,684 + +0.5
2,287,684 + +0.3
2,287,709 - +0.6
2,287,719 + +0.1
2,287,994 + -0.1
2,287,994 + +0.9
2,287,994 + -0.5
2,287,995 - +0.7
2,288,416 + -2.3
2,288,416 + -0.5
2,288,429 - +1.1
2,288,433 - +0.3
2,288,453 + -0.6
2,288,453 + +0.2
2,288,453 + +0.9
2,288,454 - -1.0
2,288,454 - -0.7
2,288,454 - -0.6
2,288,454 - -1.1
2,288,661 + -0.2
2,288,679 + -0.5
2,288,825 + -0.1
2,288,826 - +1.0
2,288,844 + +0.2
2,288,855 + -0.8
2,288,856 - -1.2
2,288,856 - -0.8
2,288,856 - -0.6
2,288,911 - -1.6
2,288,920 + -0.6
2,288,921 - -0.7
2,288,947 - +0.4
2,289,108 + +1.1
2,289,108 + +0.5
2,289,109 - -0.7
2,289,109 - -1.4
2,289,109 - -0.1
2,289,116 - -0.4
2,289,120 + -0.2
2,289,142 + -0.1

Or see this region's nucleotide sequence