Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09250 and CA264_09255 are separated by 85 nucleotides CA264_09255 and CA264_09260 are separated by 101 nucleotides
CA264_09250: CA264_09250 - hemolysin, at 2,163,575 to 2,164,624
_09250
CA264_09255: CA264_09255 - isocitrate lyase, at 2,164,710 to 2,165,990
_09255
CA264_09260: CA264_09260 - malate synthase A, at 2,166,092 to 2,167,690
_09260
Position (kb)
2164
2165
2166 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2163.724 kb on + strand, within CA264_09250 at 2163.725 kb on - strand, within CA264_09250 at 2163.736 kb on - strand, within CA264_09250 at 2163.736 kb on - strand, within CA264_09250 at 2163.757 kb on - strand, within CA264_09250 at 2163.760 kb on + strand, within CA264_09250 at 2163.760 kb on + strand, within CA264_09250 at 2163.769 kb on + strand, within CA264_09250 at 2163.836 kb on + strand, within CA264_09250 at 2163.941 kb on - strand, within CA264_09250 at 2163.941 kb on - strand, within CA264_09250 at 2163.968 kb on + strand, within CA264_09250 at 2163.969 kb on - strand, within CA264_09250 at 2164.097 kb on - strand, within CA264_09250 at 2164.133 kb on - strand, within CA264_09250 at 2164.299 kb on - strand, within CA264_09250 at 2164.300 kb on + strand, within CA264_09250 at 2164.377 kb on + strand, within CA264_09250 at 2164.378 kb on - strand, within CA264_09250 at 2164.378 kb on - strand, within CA264_09250 at 2164.610 kb on + strand at 2164.622 kb on + strand at 2164.645 kb on + strand at 2164.645 kb on + strand at 2164.645 kb on + strand at 2164.646 kb on - strand at 2164.646 kb on - strand at 2164.674 kb on - strand at 2164.674 kb on - strand at 2164.678 kb on + strand at 2164.678 kb on + strand at 2164.679 kb on - strand at 2164.692 kb on + strand at 2164.701 kb on + strand at 2164.702 kb on - strand at 2164.702 kb on - strand at 2164.704 kb on + strand at 2164.704 kb on + strand at 2164.711 kb on + strand at 2164.733 kb on + strand at 2164.740 kb on + strand at 2164.741 kb on - strand at 2164.741 kb on - strand at 2165.028 kb on + strand, within CA264_09255 at 2165.029 kb on - strand, within CA264_09255 at 2165.033 kb on + strand, within CA264_09255 at 2165.046 kb on - strand, within CA264_09255 at 2165.064 kb on - strand, within CA264_09255 at 2165.097 kb on + strand, within CA264_09255 at 2165.176 kb on + strand, within CA264_09255 at 2165.176 kb on + strand, within CA264_09255 at 2165.257 kb on - strand, within CA264_09255 at 2165.259 kb on - strand, within CA264_09255 at 2165.466 kb on + strand, within CA264_09255 at 2165.523 kb on - strand, within CA264_09255 at 2165.566 kb on + strand, within CA264_09255 at 2165.567 kb on - strand, within CA264_09255 at 2165.567 kb on - strand, within CA264_09255 at 2165.598 kb on + strand, within CA264_09255 at 2165.598 kb on + strand, within CA264_09255 at 2165.599 kb on - strand, within CA264_09255 at 2165.599 kb on - strand, within CA264_09255 at 2165.683 kb on + strand, within CA264_09255 at 2165.684 kb on - strand, within CA264_09255 at 2165.716 kb on - strand, within CA264_09255 at 2165.734 kb on + strand, within CA264_09255 at 2165.734 kb on + strand, within CA264_09255 at 2165.735 kb on - strand, within CA264_09255 at 2165.793 kb on + strand, within CA264_09255 at 2165.806 kb on + strand, within CA264_09255 at 2165.862 kb on - strand, within CA264_09255 at 2165.862 kb on - strand, within CA264_09255 at 2165.863 kb on + strand at 2165.868 kb on + strand at 2165.869 kb on - strand at 2165.892 kb on + strand at 2165.893 kb on - strand at 2165.910 kb on - strand at 2165.910 kb on - strand at 2165.910 kb on - strand at 2165.911 kb on + strand at 2165.911 kb on + strand at 2165.912 kb on - strand at 2165.912 kb on - strand at 2165.996 kb on + strand at 2165.996 kb on + strand at 2165.997 kb on - strand at 2165.997 kb on - strand at 2166.000 kb on + strand at 2166.008 kb on - strand at 2166.102 kb on + strand at 2166.102 kb on + strand at 2166.102 kb on + strand at 2166.189 kb on + strand at 2166.189 kb on + strand at 2166.190 kb on - strand at 2166.190 kb on - strand at 2166.224 kb on - strand at 2166.244 kb on + strand at 2166.324 kb on - strand, within CA264_09260 at 2166.324 kb on - strand, within CA264_09260 at 2166.414 kb on + strand, within CA264_09260 at 2166.414 kb on + strand, within CA264_09260 at 2166.415 kb on - strand, within CA264_09260 at 2166.415 kb on - strand, within CA264_09260 at 2166.418 kb on + strand, within CA264_09260 at 2166.418 kb on + strand, within CA264_09260 at 2166.418 kb on + strand, within CA264_09260 at 2166.419 kb on - strand, within CA264_09260 at 2166.419 kb on - strand, within CA264_09260 at 2166.503 kb on + strand, within CA264_09260 at 2166.503 kb on + strand, within CA264_09260 at 2166.770 kb on - strand, within CA264_09260 at 2166.770 kb on - strand, within CA264_09260 at 2166.770 kb on - strand, within CA264_09260 at 2166.772 kb on - strand, within CA264_09260 at 2166.782 kb on - strand, within CA264_09260 at 2166.800 kb on + strand, within CA264_09260 at 2166.801 kb on - strand, within CA264_09260 at 2166.824 kb on + strand, within CA264_09260 at 2166.825 kb on - strand, within CA264_09260 at 2166.863 kb on + strand, within CA264_09260 at 2166.899 kb on - strand, within CA264_09260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 2,163,724 + CA264_09250 0.14 +1.2 2,163,725 - CA264_09250 0.14 +1.7 2,163,736 - CA264_09250 0.15 -3.6 2,163,736 - CA264_09250 0.15 -1.1 2,163,757 - CA264_09250 0.17 -2.1 2,163,760 + CA264_09250 0.18 +1.6 2,163,760 + CA264_09250 0.18 +0.5 2,163,769 + CA264_09250 0.18 +1.3 2,163,836 + CA264_09250 0.25 +1.5 2,163,941 - CA264_09250 0.35 +1.2 2,163,941 - CA264_09250 0.35 +1.7 2,163,968 + CA264_09250 0.37 +1.4 2,163,969 - CA264_09250 0.38 +1.2 2,164,097 - CA264_09250 0.50 +1.4 2,164,133 - CA264_09250 0.53 +1.5 2,164,299 - CA264_09250 0.69 +1.0 2,164,300 + CA264_09250 0.69 +1.6 2,164,377 + CA264_09250 0.76 +1.7 2,164,378 - CA264_09250 0.76 +2.0 2,164,378 - CA264_09250 0.76 +0.7 2,164,610 + +0.0 2,164,622 + +0.7 2,164,645 + +0.9 2,164,645 + +0.7 2,164,645 + +0.5 2,164,646 - +0.9 2,164,646 - +0.9 2,164,674 - +0.3 2,164,674 - +1.0 2,164,678 + +0.9 2,164,678 + +0.4 2,164,679 - +1.0 2,164,692 + +0.1 2,164,701 + +0.5 2,164,702 - +0.8 2,164,702 - +0.6 2,164,704 + -0.3 2,164,704 + -0.2 2,164,711 + -0.1 2,164,733 + -0.1 2,164,740 + +0.0 2,164,741 - +0.5 2,164,741 - -0.1 2,165,028 + CA264_09255 0.25 +0.2 2,165,029 - CA264_09255 0.25 +0.5 2,165,033 + CA264_09255 0.25 -0.1 2,165,046 - CA264_09255 0.26 +0.2 2,165,064 - CA264_09255 0.28 +0.6 2,165,097 + CA264_09255 0.30 +0.3 2,165,176 + CA264_09255 0.36 -0.6 2,165,176 + CA264_09255 0.36 +0.2 2,165,257 - CA264_09255 0.43 -1.1 2,165,259 - CA264_09255 0.43 +1.3 2,165,466 + CA264_09255 0.59 -0.6 2,165,523 - CA264_09255 0.63 -0.4 2,165,566 + CA264_09255 0.67 +0.6 2,165,567 - CA264_09255 0.67 +0.3 2,165,567 - CA264_09255 0.67 +0.3 2,165,598 + CA264_09255 0.69 -1.2 2,165,598 + CA264_09255 0.69 -0.9 2,165,599 - CA264_09255 0.69 -0.4 2,165,599 - CA264_09255 0.69 +1.2 2,165,683 + CA264_09255 0.76 -0.2 2,165,684 - CA264_09255 0.76 +0.6 2,165,716 - CA264_09255 0.79 +1.1 2,165,734 + CA264_09255 0.80 +0.7 2,165,734 + CA264_09255 0.80 -0.6 2,165,735 - CA264_09255 0.80 +0.2 2,165,793 + CA264_09255 0.85 +0.7 2,165,806 + CA264_09255 0.86 +0.4 2,165,862 - CA264_09255 0.90 +0.3 2,165,862 - CA264_09255 0.90 -0.0 2,165,863 + -1.6 2,165,868 + +0.5 2,165,869 - -0.2 2,165,892 + -0.5 2,165,893 - +0.1 2,165,910 - +0.4 2,165,910 - +0.1 2,165,910 - -0.9 2,165,911 + +0.5 2,165,911 + -1.0 2,165,912 - -0.1 2,165,912 - -0.4 2,165,996 + +1.5 2,165,996 + -0.1 2,165,997 - +0.6 2,165,997 - +0.1 2,166,000 + +0.7 2,166,008 - +1.0 2,166,102 + -0.1 2,166,102 + +0.2 2,166,102 + +0.9 2,166,189 + +0.2 2,166,189 + +0.1 2,166,190 - -0.3 2,166,190 - +0.6 2,166,224 - +1.8 2,166,244 + +1.0 2,166,324 - CA264_09260 0.15 -1.4 2,166,324 - CA264_09260 0.15 +0.5 2,166,414 + CA264_09260 0.20 +0.0 2,166,414 + CA264_09260 0.20 +0.1 2,166,415 - CA264_09260 0.20 +0.2 2,166,415 - CA264_09260 0.20 -0.2 2,166,418 + CA264_09260 0.20 -0.3 2,166,418 + CA264_09260 0.20 -0.9 2,166,418 + CA264_09260 0.20 +0.1 2,166,419 - CA264_09260 0.20 +0.2 2,166,419 - CA264_09260 0.20 -0.1 2,166,503 + CA264_09260 0.26 +0.3 2,166,503 + CA264_09260 0.26 +1.5 2,166,770 - CA264_09260 0.42 +0.6 2,166,770 - CA264_09260 0.42 +1.2 2,166,770 - CA264_09260 0.42 +0.2 2,166,772 - CA264_09260 0.43 +0.1 2,166,782 - CA264_09260 0.43 +0.1 2,166,800 + CA264_09260 0.44 -0.1 2,166,801 - CA264_09260 0.44 +1.0 2,166,824 + CA264_09260 0.46 -0.1 2,166,825 - CA264_09260 0.46 +0.7 2,166,863 + CA264_09260 0.48 -0.3 2,166,899 - CA264_09260 0.50 -0.0
Or see this region's nucleotide sequence