Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08820

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08815 and CA264_08820 are separated by 209 nucleotidesCA264_08820 and CA264_08825 are separated by 59 nucleotidesCA264_08825 and CA264_08830 are separated by 37 nucleotides CA264_08815: CA264_08815 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, at 2,058,873 to 2,060,549 _08815 CA264_08820: CA264_08820 - histidine phosphatase family protein, at 2,060,759 to 2,061,388 _08820 CA264_08825: CA264_08825 - thioesterase, at 2,061,448 to 2,061,867 _08825 CA264_08830: CA264_08830 - isochorismate synthase, at 2,061,905 to 2,063,080 _08830 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -2 -1 0 1 2at 2060.577 kb on - strandat 2060.586 kb on - strandat 2060.659 kb on + strandat 2060.659 kb on + strandat 2060.682 kb on - strandat 2060.694 kb on + strandat 2060.713 kb on + strandat 2060.728 kb on - strandat 2060.749 kb on + strandat 2060.827 kb on + strand, within CA264_08820at 2060.827 kb on + strand, within CA264_08820at 2060.829 kb on + strand, within CA264_08820at 2060.830 kb on - strand, within CA264_08820at 2060.830 kb on - strand, within CA264_08820at 2060.841 kb on + strand, within CA264_08820at 2060.841 kb on + strand, within CA264_08820at 2061.084 kb on + strand, within CA264_08820at 2061.084 kb on + strand, within CA264_08820at 2061.084 kb on + strand, within CA264_08820at 2061.085 kb on - strand, within CA264_08820at 2061.085 kb on - strand, within CA264_08820at 2061.181 kb on + strand, within CA264_08820at 2061.181 kb on + strand, within CA264_08820at 2061.182 kb on - strand, within CA264_08820at 2061.200 kb on + strand, within CA264_08820at 2061.201 kb on - strand, within CA264_08820at 2061.226 kb on - strand, within CA264_08820at 2061.226 kb on - strand, within CA264_08820at 2061.233 kb on - strand, within CA264_08820at 2061.233 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.252 kb on + strand, within CA264_08820at 2061.328 kb on + strandat 2061.329 kb on - strandat 2061.341 kb on - strandat 2061.342 kb on + strandat 2061.343 kb on - strandat 2061.369 kb on + strandat 2061.369 kb on + strandat 2061.371 kb on + strandat 2061.372 kb on - strandat 2061.380 kb on - strandat 2061.411 kb on + strandat 2061.411 kb on + strandat 2061.411 kb on + strandat 2061.416 kb on - strandat 2061.421 kb on + strandat 2061.448 kb on - strandat 2061.671 kb on + strand, within CA264_08825at 2061.866 kb on - strandat 2061.901 kb on + strandat 2061.901 kb on + strandat 2061.901 kb on + strandat 2061.902 kb on - strandat 2061.902 kb on - strandat 2061.929 kb on - strandat 2061.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,060,577 - +2.0
2,060,586 - -1.0
2,060,659 + -0.3
2,060,659 + -0.5
2,060,682 - +1.6
2,060,694 + +0.4
2,060,713 + -0.9
2,060,728 - +0.1
2,060,749 + -0.4
2,060,827 + CA264_08820 0.11 -1.6
2,060,827 + CA264_08820 0.11 -1.9
2,060,829 + CA264_08820 0.11 -1.3
2,060,830 - CA264_08820 0.11 -1.1
2,060,830 - CA264_08820 0.11 -0.4
2,060,841 + CA264_08820 0.13 -0.6
2,060,841 + CA264_08820 0.13 -0.5
2,061,084 + CA264_08820 0.52 -0.1
2,061,084 + CA264_08820 0.52 -1.0
2,061,084 + CA264_08820 0.52 -0.5
2,061,085 - CA264_08820 0.52 -0.4
2,061,085 - CA264_08820 0.52 -0.3
2,061,181 + CA264_08820 0.67 -0.2
2,061,181 + CA264_08820 0.67 -1.1
2,061,182 - CA264_08820 0.67 -0.9
2,061,200 + CA264_08820 0.70 -0.7
2,061,201 - CA264_08820 0.70 -0.8
2,061,226 - CA264_08820 0.74 -0.0
2,061,226 - CA264_08820 0.74 +0.2
2,061,233 - CA264_08820 0.75 -1.3
2,061,233 - CA264_08820 0.75 -0.2
2,061,251 - CA264_08820 0.78 -0.2
2,061,251 - CA264_08820 0.78 +0.1
2,061,251 - CA264_08820 0.78 -0.3
2,061,251 - CA264_08820 0.78 -1.4
2,061,252 + CA264_08820 0.78 -1.3
2,061,328 + -0.1
2,061,329 - -0.3
2,061,341 - -0.1
2,061,342 + +0.3
2,061,343 - +0.4
2,061,369 + -0.5
2,061,369 + +0.4
2,061,371 + -0.1
2,061,372 - -1.3
2,061,380 - -0.0
2,061,411 + +0.8
2,061,411 + +0.4
2,061,411 + +0.6
2,061,416 - +0.6
2,061,421 + +0.4
2,061,448 - +0.4
2,061,671 + CA264_08825 0.53 +0.3
2,061,866 - +1.0
2,061,901 + +0.6
2,061,901 + +0.5
2,061,901 + +0.9
2,061,902 - -0.0
2,061,902 - +0.6
2,061,929 - -1.8
2,061,934 - +0.6

Or see this region's nucleotide sequence