Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08290

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08285 and CA264_08290 are separated by 5 nucleotidesCA264_08290 and CA264_08295 are separated by 7 nucleotidesCA264_08295 and CA264_08300 are separated by 143 nucleotides CA264_08285: CA264_08285 - aminotransferase, at 1,914,238 to 1,915,488 _08285 CA264_08290: CA264_08290 - Fe-S metabolism protein SufE, at 1,915,494 to 1,915,922 _08290 CA264_08295: CA264_08295 - FeS assembly SUF system protein, at 1,915,930 to 1,916,241 _08295 CA264_08300: CA264_08300 - phosphohydrolase, at 1,916,385 to 1,917,236 _08300 Position (kb) 1915 1916Strain fitness (log2 ratio) -2 -1 0 1 2at 1914.537 kb on + strand, within CA264_08285at 1914.781 kb on + strand, within CA264_08285at 1914.781 kb on + strand, within CA264_08285at 1914.781 kb on + strand, within CA264_08285at 1914.782 kb on - strand, within CA264_08285at 1914.782 kb on - strand, within CA264_08285at 1914.786 kb on - strand, within CA264_08285at 1914.896 kb on + strand, within CA264_08285at 1914.896 kb on + strand, within CA264_08285at 1914.902 kb on + strand, within CA264_08285at 1914.902 kb on + strand, within CA264_08285at 1914.903 kb on - strand, within CA264_08285at 1914.949 kb on + strand, within CA264_08285at 1915.063 kb on + strand, within CA264_08285at 1915.064 kb on - strand, within CA264_08285at 1915.065 kb on + strand, within CA264_08285at 1915.199 kb on - strand, within CA264_08285at 1915.307 kb on + strand, within CA264_08285at 1915.379 kb on - strandat 1915.381 kb on + strandat 1915.381 kb on + strandat 1915.382 kb on - strandat 1915.439 kb on + strandat 1915.482 kb on - strandat 1915.563 kb on + strand, within CA264_08290at 1915.564 kb on - strand, within CA264_08290at 1915.564 kb on - strand, within CA264_08290at 1915.569 kb on + strand, within CA264_08290at 1915.569 kb on + strand, within CA264_08290at 1915.570 kb on - strand, within CA264_08290at 1915.658 kb on - strand, within CA264_08290at 1915.747 kb on + strand, within CA264_08290at 1915.756 kb on + strand, within CA264_08290at 1915.797 kb on + strand, within CA264_08290at 1915.798 kb on - strand, within CA264_08290at 1915.920 kb on + strandat 1915.926 kb on + strandat 1915.958 kb on + strandat 1915.959 kb on - strandat 1916.004 kb on + strand, within CA264_08295at 1916.004 kb on + strand, within CA264_08295at 1916.008 kb on + strand, within CA264_08295at 1916.009 kb on - strand, within CA264_08295at 1916.025 kb on - strand, within CA264_08295at 1916.025 kb on - strand, within CA264_08295at 1916.025 kb on - strand, within CA264_08295at 1916.026 kb on + strand, within CA264_08295at 1916.063 kb on + strand, within CA264_08295at 1916.064 kb on - strand, within CA264_08295at 1916.076 kb on + strand, within CA264_08295at 1916.076 kb on + strand, within CA264_08295at 1916.121 kb on - strand, within CA264_08295at 1916.200 kb on - strand, within CA264_08295at 1916.245 kb on - strandat 1916.415 kb on - strandat 1916.473 kb on - strand, within CA264_08300at 1916.558 kb on + strand, within CA264_08300at 1916.580 kb on + strand, within CA264_08300at 1916.611 kb on + strand, within CA264_08300at 1916.758 kb on + strand, within CA264_08300at 1916.759 kb on - strand, within CA264_08300at 1916.759 kb on - strand, within CA264_08300at 1916.776 kb on + strand, within CA264_08300at 1916.777 kb on - strand, within CA264_08300at 1916.778 kb on + strand, within CA264_08300at 1916.779 kb on - strand, within CA264_08300at 1916.789 kb on + strand, within CA264_08300at 1916.806 kb on + strand, within CA264_08300at 1916.807 kb on - strand, within CA264_08300at 1916.823 kb on + strand, within CA264_08300at 1916.824 kb on - strand, within CA264_08300at 1916.825 kb on + strand, within CA264_08300at 1916.826 kb on - strand, within CA264_08300at 1916.826 kb on - strand, within CA264_08300at 1916.830 kb on + strand, within CA264_08300at 1916.911 kb on + strand, within CA264_08300at 1916.912 kb on - strand, within CA264_08300at 1916.912 kb on - strand, within CA264_08300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,914,537 + CA264_08285 0.24 +0.3
1,914,781 + CA264_08285 0.43 +0.9
1,914,781 + CA264_08285 0.43 -0.4
1,914,781 + CA264_08285 0.43 -0.3
1,914,782 - CA264_08285 0.43 -0.3
1,914,782 - CA264_08285 0.43 +0.3
1,914,786 - CA264_08285 0.44 -0.1
1,914,896 + CA264_08285 0.53 +0.4
1,914,896 + CA264_08285 0.53 -0.1
1,914,902 + CA264_08285 0.53 -0.1
1,914,902 + CA264_08285 0.53 -1.1
1,914,903 - CA264_08285 0.53 +1.0
1,914,949 + CA264_08285 0.57 -0.3
1,915,063 + CA264_08285 0.66 -0.4
1,915,064 - CA264_08285 0.66 +0.3
1,915,065 + CA264_08285 0.66 -0.1
1,915,199 - CA264_08285 0.77 -0.2
1,915,307 + CA264_08285 0.85 -0.3
1,915,379 - +0.8
1,915,381 + +0.7
1,915,381 + -0.6
1,915,382 - +0.0
1,915,439 + -0.9
1,915,482 - -0.3
1,915,563 + CA264_08290 0.16 +0.4
1,915,564 - CA264_08290 0.16 -0.5
1,915,564 - CA264_08290 0.16 +1.4
1,915,569 + CA264_08290 0.17 -0.7
1,915,569 + CA264_08290 0.17 -0.7
1,915,570 - CA264_08290 0.18 +0.7
1,915,658 - CA264_08290 0.38 +0.3
1,915,747 + CA264_08290 0.59 +0.9
1,915,756 + CA264_08290 0.61 +0.7
1,915,797 + CA264_08290 0.71 -0.5
1,915,798 - CA264_08290 0.71 -0.3
1,915,920 + +0.7
1,915,926 + -0.2
1,915,958 + -0.1
1,915,959 - -0.5
1,916,004 + CA264_08295 0.24 -0.2
1,916,004 + CA264_08295 0.24 -0.8
1,916,008 + CA264_08295 0.25 +0.1
1,916,009 - CA264_08295 0.25 +0.1
1,916,025 - CA264_08295 0.30 -0.1
1,916,025 - CA264_08295 0.30 +0.2
1,916,025 - CA264_08295 0.30 -0.0
1,916,026 + CA264_08295 0.31 +0.5
1,916,063 + CA264_08295 0.43 -0.4
1,916,064 - CA264_08295 0.43 +2.5
1,916,076 + CA264_08295 0.47 -1.1
1,916,076 + CA264_08295 0.47 +1.2
1,916,121 - CA264_08295 0.61 +0.8
1,916,200 - CA264_08295 0.87 -0.1
1,916,245 - +1.3
1,916,415 - -0.4
1,916,473 - CA264_08300 0.10 +0.0
1,916,558 + CA264_08300 0.20 +0.5
1,916,580 + CA264_08300 0.23 -0.0
1,916,611 + CA264_08300 0.27 +0.1
1,916,758 + CA264_08300 0.44 +0.4
1,916,759 - CA264_08300 0.44 -0.0
1,916,759 - CA264_08300 0.44 -1.4
1,916,776 + CA264_08300 0.46 -0.3
1,916,777 - CA264_08300 0.46 +0.3
1,916,778 + CA264_08300 0.46 +0.1
1,916,779 - CA264_08300 0.46 -0.4
1,916,789 + CA264_08300 0.47 +0.4
1,916,806 + CA264_08300 0.49 +0.9
1,916,807 - CA264_08300 0.50 -0.9
1,916,823 + CA264_08300 0.51 -0.7
1,916,824 - CA264_08300 0.52 -0.1
1,916,825 + CA264_08300 0.52 -1.0
1,916,826 - CA264_08300 0.52 -0.3
1,916,826 - CA264_08300 0.52 -0.1
1,916,830 + CA264_08300 0.52 -2.6
1,916,911 + CA264_08300 0.62 -0.3
1,916,912 - CA264_08300 0.62 -0.3
1,916,912 - CA264_08300 0.62 -0.1

Or see this region's nucleotide sequence