Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07455

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07450 and CA264_07455 are separated by 195 nucleotidesCA264_07455 and CA264_07460 are separated by 445 nucleotides CA264_07450: CA264_07450 - trehalose-phosphatase, at 1,720,449 to 1,724,436 _07450 CA264_07455: CA264_07455 - hydrolase, at 1,724,632 to 1,725,408 _07455 CA264_07460: CA264_07460 - hypothetical protein, at 1,725,854 to 1,728,571 _07460 Position (kb) 1724 1725 1726Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1723.677 kb on + strand, within CA264_07450at 1723.678 kb on - strand, within CA264_07450at 1723.678 kb on - strand, within CA264_07450at 1723.678 kb on - strand, within CA264_07450at 1723.678 kb on - strand, within CA264_07450at 1723.678 kb on - strand, within CA264_07450at 1723.686 kb on + strand, within CA264_07450at 1723.686 kb on + strand, within CA264_07450at 1723.687 kb on - strand, within CA264_07450at 1723.900 kb on + strand, within CA264_07450at 1723.972 kb on + strand, within CA264_07450at 1723.973 kb on - strand, within CA264_07450at 1723.973 kb on - strand, within CA264_07450at 1723.999 kb on + strand, within CA264_07450at 1724.061 kb on - strandat 1724.109 kb on + strandat 1724.152 kb on + strandat 1724.153 kb on - strandat 1724.153 kb on - strandat 1724.213 kb on + strandat 1724.231 kb on - strandat 1724.260 kb on + strandat 1724.260 kb on + strandat 1724.271 kb on - strandat 1724.272 kb on + strandat 1724.272 kb on + strandat 1724.273 kb on - strandat 1724.393 kb on - strandat 1724.485 kb on - strandat 1724.497 kb on + strandat 1724.571 kb on - strandat 1724.614 kb on - strandat 1724.617 kb on + strandat 1724.638 kb on - strandat 1724.725 kb on - strand, within CA264_07455at 1724.726 kb on + strand, within CA264_07455at 1725.212 kb on + strand, within CA264_07455at 1725.213 kb on - strand, within CA264_07455at 1725.394 kb on - strandat 1725.475 kb on + strandat 1725.476 kb on - strandat 1725.509 kb on + strandat 1725.555 kb on + strandat 1725.557 kb on + strandat 1725.558 kb on - strandat 1725.607 kb on - strandat 1725.607 kb on - strandat 1725.608 kb on + strandat 1725.626 kb on + strandat 1725.675 kb on + strandat 1725.710 kb on - strandat 1725.718 kb on - strandat 1725.718 kb on - strandat 1725.728 kb on - strandat 1725.747 kb on - strandat 1725.750 kb on + strandat 1725.751 kb on - strandat 1725.856 kb on - strandat 1725.874 kb on + strandat 1725.921 kb on - strandat 1725.991 kb on - strandat 1726.023 kb on - strandat 1726.037 kb on + strandat 1726.037 kb on + strandat 1726.037 kb on + strandat 1726.041 kb on + strandat 1726.041 kb on + strandat 1726.042 kb on - strandat 1726.042 kb on - strandat 1726.097 kb on - strandat 1726.102 kb on + strandat 1726.103 kb on - strandat 1726.109 kb on + strandat 1726.110 kb on - strandat 1726.174 kb on - strand, within CA264_07460at 1726.174 kb on - strand, within CA264_07460at 1726.214 kb on - strand, within CA264_07460at 1726.223 kb on + strand, within CA264_07460at 1726.228 kb on + strand, within CA264_07460at 1726.228 kb on + strand, within CA264_07460at 1726.290 kb on - strand, within CA264_07460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,723,677 + CA264_07450 0.81 +0.3
1,723,678 - CA264_07450 0.81 -0.6
1,723,678 - CA264_07450 0.81 -0.6
1,723,678 - CA264_07450 0.81 -0.1
1,723,678 - CA264_07450 0.81 +0.1
1,723,678 - CA264_07450 0.81 +0.2
1,723,686 + CA264_07450 0.81 +2.8
1,723,686 + CA264_07450 0.81 +0.6
1,723,687 - CA264_07450 0.81 -0.6
1,723,900 + CA264_07450 0.87 -1.7
1,723,972 + CA264_07450 0.88 -0.3
1,723,973 - CA264_07450 0.88 -0.0
1,723,973 - CA264_07450 0.88 +0.5
1,723,999 + CA264_07450 0.89 +0.5
1,724,061 - -0.9
1,724,109 + +0.0
1,724,152 + +0.4
1,724,153 - +0.4
1,724,153 - -1.2
1,724,213 + +0.5
1,724,231 - -1.0
1,724,260 + +1.6
1,724,260 + +0.1
1,724,271 - -0.0
1,724,272 + -0.4
1,724,272 + +0.5
1,724,273 - +0.2
1,724,393 - -0.1
1,724,485 - -0.1
1,724,497 + +0.1
1,724,571 - +1.1
1,724,614 - -0.6
1,724,617 + -1.3
1,724,638 - -0.6
1,724,725 - CA264_07455 0.12 -0.3
1,724,726 + CA264_07455 0.12 -1.4
1,725,212 + CA264_07455 0.75 -2.8
1,725,213 - CA264_07455 0.75 -2.1
1,725,394 - -2.8
1,725,475 + +0.9
1,725,476 - +1.0
1,725,509 + +0.3
1,725,555 + +0.9
1,725,557 + +1.7
1,725,558 - +1.3
1,725,607 - -0.5
1,725,607 - +0.8
1,725,608 + +0.2
1,725,626 + +0.5
1,725,675 + +1.4
1,725,710 - +0.4
1,725,718 - +0.5
1,725,718 - -0.2
1,725,728 - +0.5
1,725,747 - +1.0
1,725,750 + +0.8
1,725,751 - +0.8
1,725,856 - +1.0
1,725,874 + +1.5
1,725,921 - +1.4
1,725,991 - +0.4
1,726,023 - +0.8
1,726,037 + +0.8
1,726,037 + +0.9
1,726,037 + +0.6
1,726,041 + +0.7
1,726,041 + -0.4
1,726,042 - +1.3
1,726,042 - +0.7
1,726,097 - +0.9
1,726,102 + -0.0
1,726,103 - +0.9
1,726,109 + -0.3
1,726,110 - +0.6
1,726,174 - CA264_07460 0.12 +0.9
1,726,174 - CA264_07460 0.12 +0.4
1,726,214 - CA264_07460 0.13 +0.6
1,726,223 + CA264_07460 0.14 +1.7
1,726,228 + CA264_07460 0.14 +0.8
1,726,228 + CA264_07460 0.14 -0.6
1,726,290 - CA264_07460 0.16 +0.9

Or see this region's nucleotide sequence