Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07415

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07410 and CA264_07415 are separated by 66 nucleotidesCA264_07415 and CA264_07420 overlap by 8 nucleotides CA264_07410: CA264_07410 - hypothetical protein, at 1,707,057 to 1,707,845 _07410 CA264_07415: CA264_07415 - DNA topoisomerase IV, at 1,707,912 to 1,710,665 _07415 CA264_07420: CA264_07420 - DNA topoisomerase IV, at 1,710,658 to 1,712,520 _07420 Position (kb) 1707 1708 1709 1710 1711Strain fitness (log2 ratio) -1 0 1 2at 1706.976 kb on + strandat 1706.976 kb on + strandat 1707.047 kb on + strandat 1707.059 kb on - strandat 1707.059 kb on - strandat 1707.078 kb on + strandat 1707.079 kb on - strandat 1707.083 kb on + strandat 1707.190 kb on + strand, within CA264_07410at 1707.190 kb on + strand, within CA264_07410at 1707.191 kb on - strand, within CA264_07410at 1707.212 kb on - strand, within CA264_07410at 1707.214 kb on + strand, within CA264_07410at 1707.224 kb on + strand, within CA264_07410at 1707.355 kb on + strand, within CA264_07410at 1707.355 kb on + strand, within CA264_07410at 1707.371 kb on + strand, within CA264_07410at 1707.539 kb on - strand, within CA264_07410at 1707.584 kb on + strand, within CA264_07410at 1707.628 kb on + strand, within CA264_07410at 1707.629 kb on - strand, within CA264_07410at 1707.652 kb on + strand, within CA264_07410at 1707.653 kb on - strand, within CA264_07410at 1707.653 kb on - strand, within CA264_07410at 1707.653 kb on - strand, within CA264_07410at 1707.675 kb on + strand, within CA264_07410at 1707.710 kb on + strand, within CA264_07410at 1707.710 kb on + strand, within CA264_07410at 1707.712 kb on + strand, within CA264_07410at 1707.712 kb on + strand, within CA264_07410at 1707.824 kb on + strandat 1707.845 kb on + strandat 1707.849 kb on + strandat 1707.849 kb on + strandat 1707.849 kb on + strandat 1707.849 kb on + strandat 1707.850 kb on - strandat 1707.850 kb on - strandat 1707.862 kb on + strandat 1707.862 kb on + strandat 1707.862 kb on + strandat 1707.908 kb on + strandat 1707.914 kb on - strandat 1707.982 kb on - strandat 1710.666 kb on - strandat 1710.666 kb on - strandat 1710.666 kb on - strandat 1710.667 kb on + strandat 1710.679 kb on + strandat 1710.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,706,976 + -0.1
1,706,976 + -0.1
1,707,047 + -0.6
1,707,059 - -0.2
1,707,059 - +1.7
1,707,078 + +0.0
1,707,079 - +0.1
1,707,083 + -0.1
1,707,190 + CA264_07410 0.17 +0.6
1,707,190 + CA264_07410 0.17 -0.7
1,707,191 - CA264_07410 0.17 -0.0
1,707,212 - CA264_07410 0.20 -0.3
1,707,214 + CA264_07410 0.20 +0.4
1,707,224 + CA264_07410 0.21 +0.5
1,707,355 + CA264_07410 0.38 -0.6
1,707,355 + CA264_07410 0.38 -0.2
1,707,371 + CA264_07410 0.40 -0.4
1,707,539 - CA264_07410 0.61 -0.5
1,707,584 + CA264_07410 0.67 +1.2
1,707,628 + CA264_07410 0.72 +0.3
1,707,629 - CA264_07410 0.72 +0.1
1,707,652 + CA264_07410 0.75 -0.4
1,707,653 - CA264_07410 0.76 -0.0
1,707,653 - CA264_07410 0.76 +0.5
1,707,653 - CA264_07410 0.76 +0.6
1,707,675 + CA264_07410 0.78 +0.9
1,707,710 + CA264_07410 0.83 +1.1
1,707,710 + CA264_07410 0.83 -1.6
1,707,712 + CA264_07410 0.83 +2.4
1,707,712 + CA264_07410 0.83 +0.6
1,707,824 + -0.8
1,707,845 + +0.6
1,707,849 + +0.4
1,707,849 + -1.0
1,707,849 + +0.6
1,707,849 + -0.2
1,707,850 - +0.6
1,707,850 - +1.3
1,707,862 + -0.7
1,707,862 + +1.3
1,707,862 + -1.3
1,707,908 + +0.9
1,707,914 - -0.4
1,707,982 - +0.1
1,710,666 - +0.5
1,710,666 - -0.1
1,710,666 - -0.1
1,710,667 + +0.2
1,710,679 + -0.1
1,710,680 - +0.2

Or see this region's nucleotide sequence