Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06665

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06660 and CA264_06665 are separated by 253 nucleotidesCA264_06665 and CA264_06670 are separated by 158 nucleotides CA264_06660: CA264_06660 - type I restriction-modification system endonuclease, at 1,533,316 to 1,536,339 _06660 CA264_06665: CA264_06665 - IS481 family transposase, at 1,536,593 to 1,537,606 _06665 CA264_06670: CA264_06670 - hypothetical protein, at 1,537,765 to 1,539,279 _06670 Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1535.618 kb on + strand, within CA264_06660at 1535.619 kb on - strand, within CA264_06660at 1535.778 kb on + strand, within CA264_06660at 1535.780 kb on + strand, within CA264_06660at 1535.944 kb on - strand, within CA264_06660at 1535.988 kb on - strand, within CA264_06660at 1536.009 kb on - strand, within CA264_06660at 1536.056 kb on + strandat 1536.079 kb on + strandat 1536.086 kb on + strandat 1536.087 kb on - strandat 1536.145 kb on - strandat 1536.149 kb on + strandat 1536.150 kb on - strandat 1536.313 kb on - strandat 1536.319 kb on + strandat 1536.320 kb on - strandat 1536.320 kb on - strandat 1536.333 kb on - strandat 1536.333 kb on - strandat 1536.337 kb on + strandat 1536.338 kb on - strandat 1536.359 kb on + strandat 1536.360 kb on - strandat 1536.376 kb on + strandat 1536.383 kb on + strandat 1536.383 kb on + strandat 1536.384 kb on - strandat 1536.399 kb on + strandat 1536.400 kb on - strandat 1536.400 kb on - strandat 1536.406 kb on - strandat 1537.686 kb on - strandat 1537.687 kb on + strandat 1537.687 kb on + strandat 1537.687 kb on + strandat 1537.687 kb on + strandat 1537.749 kb on + strandat 1537.749 kb on + strandat 1537.774 kb on - strandat 1537.783 kb on + strandat 1537.783 kb on + strandat 1537.785 kb on + strandat 1537.785 kb on + strandat 1537.816 kb on + strandat 1537.816 kb on + strandat 1537.816 kb on + strandat 1537.817 kb on - strandat 1537.890 kb on + strandat 1537.909 kb on - strandat 1537.963 kb on - strand, within CA264_06670at 1537.964 kb on + strand, within CA264_06670at 1537.965 kb on - strand, within CA264_06670at 1537.965 kb on - strand, within CA264_06670at 1538.014 kb on + strand, within CA264_06670at 1538.014 kb on + strand, within CA264_06670at 1538.019 kb on - strand, within CA264_06670at 1538.038 kb on - strand, within CA264_06670at 1538.112 kb on + strand, within CA264_06670at 1538.113 kb on - strand, within CA264_06670at 1538.179 kb on + strand, within CA264_06670at 1538.198 kb on - strand, within CA264_06670at 1538.226 kb on + strand, within CA264_06670at 1538.287 kb on + strand, within CA264_06670at 1538.288 kb on - strand, within CA264_06670at 1538.288 kb on - strand, within CA264_06670at 1538.324 kb on + strand, within CA264_06670at 1538.351 kb on + strand, within CA264_06670at 1538.351 kb on + strand, within CA264_06670at 1538.363 kb on + strand, within CA264_06670at 1538.363 kb on + strand, within CA264_06670at 1538.364 kb on - strand, within CA264_06670at 1538.364 kb on - strand, within CA264_06670at 1538.439 kb on - strand, within CA264_06670at 1538.530 kb on - strand, within CA264_06670at 1538.561 kb on + strand, within CA264_06670at 1538.562 kb on - strand, within CA264_06670at 1538.565 kb on - strand, within CA264_06670at 1538.565 kb on - strand, within CA264_06670at 1538.565 kb on - strand, within CA264_06670at 1538.565 kb on - strand, within CA264_06670at 1538.579 kb on - strand, within CA264_06670at 1538.601 kb on - strand, within CA264_06670

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,535,618 + CA264_06660 0.76 -0.5
1,535,619 - CA264_06660 0.76 +0.0
1,535,778 + CA264_06660 0.81 -0.2
1,535,780 + CA264_06660 0.81 +0.5
1,535,944 - CA264_06660 0.87 -0.2
1,535,988 - CA264_06660 0.88 -0.2
1,536,009 - CA264_06660 0.89 -1.2
1,536,056 + +0.3
1,536,079 + +0.2
1,536,086 + -0.4
1,536,087 - +1.2
1,536,145 - -0.7
1,536,149 + +0.4
1,536,150 - -1.6
1,536,313 - +1.4
1,536,319 + +0.1
1,536,320 - -0.4
1,536,320 - +1.0
1,536,333 - -1.2
1,536,333 - -0.2
1,536,337 + -1.3
1,536,338 - -0.2
1,536,359 + +0.3
1,536,360 - -2.0
1,536,376 + +3.4
1,536,383 + -0.8
1,536,383 + -0.6
1,536,384 - +0.4
1,536,399 + +1.4
1,536,400 - -0.5
1,536,400 - +0.2
1,536,406 - +0.6
1,537,686 - -0.7
1,537,687 + +1.4
1,537,687 + +0.4
1,537,687 + -0.9
1,537,687 + +0.2
1,537,749 + -1.7
1,537,749 + -0.2
1,537,774 - -0.3
1,537,783 + -0.5
1,537,783 + +1.0
1,537,785 + -0.6
1,537,785 + +0.3
1,537,816 + +0.3
1,537,816 + -0.0
1,537,816 + -0.8
1,537,817 - -0.0
1,537,890 + +0.1
1,537,909 - -0.1
1,537,963 - CA264_06670 0.13 +0.2
1,537,964 + CA264_06670 0.13 -0.8
1,537,965 - CA264_06670 0.13 -0.5
1,537,965 - CA264_06670 0.13 -0.5
1,538,014 + CA264_06670 0.16 +0.0
1,538,014 + CA264_06670 0.16 +0.8
1,538,019 - CA264_06670 0.17 +1.1
1,538,038 - CA264_06670 0.18 -0.3
1,538,112 + CA264_06670 0.23 -0.9
1,538,113 - CA264_06670 0.23 -0.0
1,538,179 + CA264_06670 0.27 -0.2
1,538,198 - CA264_06670 0.29 +0.2
1,538,226 + CA264_06670 0.30 -0.5
1,538,287 + CA264_06670 0.34 -0.1
1,538,288 - CA264_06670 0.35 +0.1
1,538,288 - CA264_06670 0.35 -0.7
1,538,324 + CA264_06670 0.37 +0.5
1,538,351 + CA264_06670 0.39 -1.6
1,538,351 + CA264_06670 0.39 -0.2
1,538,363 + CA264_06670 0.39 -0.6
1,538,363 + CA264_06670 0.39 -0.3
1,538,364 - CA264_06670 0.40 -0.6
1,538,364 - CA264_06670 0.40 -0.5
1,538,439 - CA264_06670 0.44 -0.6
1,538,530 - CA264_06670 0.50 +0.5
1,538,561 + CA264_06670 0.53 -1.0
1,538,562 - CA264_06670 0.53 -0.7
1,538,565 - CA264_06670 0.53 -2.2
1,538,565 - CA264_06670 0.53 -0.1
1,538,565 - CA264_06670 0.53 +0.2
1,538,565 - CA264_06670 0.53 +0.1
1,538,579 - CA264_06670 0.54 +1.2
1,538,601 - CA264_06670 0.55 -0.4

Or see this region's nucleotide sequence