Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06350

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06345 and CA264_06350 are separated by 47 nucleotidesCA264_06350 and CA264_06355 are separated by 242 nucleotides CA264_06345: CA264_06345 - hypothetical protein, at 1,473,653 to 1,475,434 _06345 CA264_06350: CA264_06350 - o-succinylbenzoate synthase, at 1,475,482 to 1,476,537 _06350 CA264_06355: CA264_06355 - ergothioneine biosynthesis protein EgtB, at 1,476,780 to 1,478,051 _06355 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -1 0 1 2 3at 1474.501 kb on + strand, within CA264_06345at 1474.502 kb on - strand, within CA264_06345at 1474.502 kb on - strand, within CA264_06345at 1474.506 kb on + strand, within CA264_06345at 1474.532 kb on + strandat 1474.533 kb on - strand, within CA264_06345at 1474.540 kb on + strand, within CA264_06345at 1474.540 kb on + strand, within CA264_06345at 1474.540 kb on + strand, within CA264_06345at 1474.542 kb on + strand, within CA264_06345at 1474.542 kb on + strand, within CA264_06345at 1474.542 kb on + strand, within CA264_06345at 1474.543 kb on - strand, within CA264_06345at 1474.543 kb on - strand, within CA264_06345at 1474.543 kb on - strand, within CA264_06345at 1474.676 kb on - strand, within CA264_06345at 1474.676 kb on - strand, within CA264_06345at 1474.717 kb on + strand, within CA264_06345at 1474.717 kb on + strand, within CA264_06345at 1474.717 kb on + strand, within CA264_06345at 1474.718 kb on - strand, within CA264_06345at 1474.718 kb on - strand, within CA264_06345at 1474.796 kb on - strand, within CA264_06345at 1474.891 kb on + strand, within CA264_06345at 1474.891 kb on + strand, within CA264_06345at 1474.891 kb on + strand, within CA264_06345at 1474.892 kb on - strand, within CA264_06345at 1474.892 kb on - strand, within CA264_06345at 1474.931 kb on + strand, within CA264_06345at 1474.932 kb on - strand, within CA264_06345at 1474.946 kb on + strand, within CA264_06345at 1474.969 kb on + strand, within CA264_06345at 1475.012 kb on - strand, within CA264_06345at 1475.204 kb on - strand, within CA264_06345at 1475.222 kb on + strand, within CA264_06345at 1475.223 kb on - strand, within CA264_06345at 1475.223 kb on - strand, within CA264_06345at 1475.223 kb on - strand, within CA264_06345at 1475.223 kb on - strand, within CA264_06345at 1475.277 kb on - strandat 1475.277 kb on - strandat 1475.285 kb on - strandat 1475.298 kb on + strandat 1475.298 kb on + strandat 1475.298 kb on + strandat 1475.357 kb on + strandat 1475.358 kb on - strandat 1475.410 kb on + strandat 1475.413 kb on + strandat 1475.488 kb on - strandat 1476.546 kb on + strandat 1476.567 kb on - strandat 1476.591 kb on + strandat 1476.610 kb on - strandat 1476.625 kb on + strandat 1476.626 kb on - strandat 1476.725 kb on - strandat 1476.725 kb on - strandat 1476.775 kb on - strandat 1476.779 kb on + strandat 1476.779 kb on + strandat 1476.779 kb on + strandat 1476.780 kb on - strandat 1476.835 kb on + strandat 1476.835 kb on + strandat 1476.835 kb on + strandat 1476.835 kb on + strandat 1476.836 kb on - strandat 1476.960 kb on - strand, within CA264_06355at 1476.961 kb on + strand, within CA264_06355at 1476.961 kb on + strand, within CA264_06355at 1477.029 kb on + strand, within CA264_06355at 1477.030 kb on - strand, within CA264_06355at 1477.030 kb on - strand, within CA264_06355at 1477.101 kb on + strand, within CA264_06355at 1477.101 kb on + strand, within CA264_06355at 1477.101 kb on + strand, within CA264_06355at 1477.102 kb on - strand, within CA264_06355at 1477.103 kb on + strand, within CA264_06355at 1477.104 kb on - strand, within CA264_06355at 1477.120 kb on + strand, within CA264_06355at 1477.249 kb on - strand, within CA264_06355at 1477.249 kb on - strand, within CA264_06355at 1477.356 kb on + strand, within CA264_06355at 1477.358 kb on + strand, within CA264_06355at 1477.358 kb on + strand, within CA264_06355at 1477.417 kb on + strand, within CA264_06355at 1477.417 kb on + strand, within CA264_06355at 1477.418 kb on - strand, within CA264_06355at 1477.418 kb on - strand, within CA264_06355at 1477.468 kb on - strand, within CA264_06355at 1477.478 kb on + strand, within CA264_06355at 1477.495 kb on - strand, within CA264_06355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,474,501 + CA264_06345 0.48 +0.7
1,474,502 - CA264_06345 0.48 +1.4
1,474,502 - CA264_06345 0.48 -0.2
1,474,506 + CA264_06345 0.48 +0.2
1,474,532 + +1.1
1,474,533 - CA264_06345 0.49 +0.0
1,474,540 + CA264_06345 0.50 +0.2
1,474,540 + CA264_06345 0.50 +0.4
1,474,540 + CA264_06345 0.50 +0.4
1,474,542 + CA264_06345 0.50 +0.6
1,474,542 + CA264_06345 0.50 -0.2
1,474,542 + CA264_06345 0.50 +0.0
1,474,543 - CA264_06345 0.50 +0.3
1,474,543 - CA264_06345 0.50 +1.0
1,474,543 - CA264_06345 0.50 +1.0
1,474,676 - CA264_06345 0.57 +1.2
1,474,676 - CA264_06345 0.57 +0.1
1,474,717 + CA264_06345 0.60 +0.5
1,474,717 + CA264_06345 0.60 +0.7
1,474,717 + CA264_06345 0.60 +0.5
1,474,718 - CA264_06345 0.60 +0.2
1,474,718 - CA264_06345 0.60 -0.3
1,474,796 - CA264_06345 0.64 +0.7
1,474,891 + CA264_06345 0.69 +0.1
1,474,891 + CA264_06345 0.69 +1.7
1,474,891 + CA264_06345 0.69 +1.1
1,474,892 - CA264_06345 0.70 +0.3
1,474,892 - CA264_06345 0.70 +1.4
1,474,931 + CA264_06345 0.72 +0.6
1,474,932 - CA264_06345 0.72 +0.3
1,474,946 + CA264_06345 0.73 -0.2
1,474,969 + CA264_06345 0.74 +1.5
1,475,012 - CA264_06345 0.76 -0.1
1,475,204 - CA264_06345 0.87 -0.8
1,475,222 + CA264_06345 0.88 +0.4
1,475,223 - CA264_06345 0.88 +0.3
1,475,223 - CA264_06345 0.88 +0.3
1,475,223 - CA264_06345 0.88 +0.5
1,475,223 - CA264_06345 0.88 +0.9
1,475,277 - +1.0
1,475,277 - +1.0
1,475,285 - +0.2
1,475,298 + +0.9
1,475,298 + +0.5
1,475,298 + +0.7
1,475,357 + +0.1
1,475,358 - +0.1
1,475,410 + +1.1
1,475,413 + +0.8
1,475,488 - +0.5
1,476,546 + +0.2
1,476,567 - +1.8
1,476,591 + +0.7
1,476,610 - +0.8
1,476,625 + +0.7
1,476,626 - +1.0
1,476,725 - +0.7
1,476,725 - +0.2
1,476,775 - +1.3
1,476,779 + +1.1
1,476,779 + +1.9
1,476,779 + +1.9
1,476,780 - +0.9
1,476,835 + +1.1
1,476,835 + +2.3
1,476,835 + +3.2
1,476,835 + +1.2
1,476,836 - +1.7
1,476,960 - CA264_06355 0.14 -0.4
1,476,961 + CA264_06355 0.14 +1.4
1,476,961 + CA264_06355 0.14 +2.9
1,477,029 + CA264_06355 0.20 +1.4
1,477,030 - CA264_06355 0.20 +1.9
1,477,030 - CA264_06355 0.20 +1.3
1,477,101 + CA264_06355 0.25 +1.7
1,477,101 + CA264_06355 0.25 +1.2
1,477,101 + CA264_06355 0.25 +1.5
1,477,102 - CA264_06355 0.25 +1.3
1,477,103 + CA264_06355 0.25 +1.7
1,477,104 - CA264_06355 0.25 +2.0
1,477,120 + CA264_06355 0.27 +2.2
1,477,249 - CA264_06355 0.37 +1.1
1,477,249 - CA264_06355 0.37 +0.9
1,477,356 + CA264_06355 0.45 +1.4
1,477,358 + CA264_06355 0.45 +2.1
1,477,358 + CA264_06355 0.45 +1.5
1,477,417 + CA264_06355 0.50 +0.6
1,477,417 + CA264_06355 0.50 +3.0
1,477,418 - CA264_06355 0.50 +2.0
1,477,418 - CA264_06355 0.50 +1.5
1,477,468 - CA264_06355 0.54 +1.2
1,477,478 + CA264_06355 0.55 +1.7
1,477,495 - CA264_06355 0.56 +1.0

Or see this region's nucleotide sequence