Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06195

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06190 and CA264_06195 are separated by 163 nucleotidesCA264_06195 and CA264_06200 are separated by 589 nucleotides CA264_06190: CA264_06190 - molecular chaperone DnaJ, at 1,441,650 to 1,442,606 _06190 CA264_06195: CA264_06195 - YqaE/Pmp3 family membrane protein, at 1,442,770 to 1,442,952 _06195 CA264_06200: CA264_06200 - N-formylglutamate amidohydrolase, at 1,443,542 to 1,444,270 _06200 Position (kb) 1442 1443Strain fitness (log2 ratio) -2 -1 0 1 2at 1441.778 kb on - strand, within CA264_06190at 1441.779 kb on + strand, within CA264_06190at 1441.780 kb on - strand, within CA264_06190at 1441.841 kb on + strand, within CA264_06190at 1441.865 kb on + strand, within CA264_06190at 1441.865 kb on + strand, within CA264_06190at 1441.866 kb on - strand, within CA264_06190at 1441.866 kb on - strand, within CA264_06190at 1441.869 kb on + strand, within CA264_06190at 1441.869 kb on + strand, within CA264_06190at 1441.870 kb on - strand, within CA264_06190at 1441.890 kb on + strand, within CA264_06190at 1441.900 kb on + strand, within CA264_06190at 1441.901 kb on - strand, within CA264_06190at 1441.901 kb on - strand, within CA264_06190at 1441.966 kb on - strand, within CA264_06190at 1441.977 kb on - strand, within CA264_06190at 1442.122 kb on + strand, within CA264_06190at 1442.148 kb on - strand, within CA264_06190at 1442.159 kb on - strand, within CA264_06190at 1442.339 kb on - strand, within CA264_06190at 1442.339 kb on - strand, within CA264_06190at 1442.342 kb on - strand, within CA264_06190at 1442.410 kb on + strand, within CA264_06190at 1442.410 kb on + strand, within CA264_06190at 1442.600 kb on - strandat 1442.663 kb on - strandat 1442.703 kb on + strandat 1442.765 kb on - strandat 1442.794 kb on + strand, within CA264_06195at 1442.914 kb on + strand, within CA264_06195at 1442.915 kb on - strand, within CA264_06195at 1442.923 kb on + strand, within CA264_06195at 1443.100 kb on + strandat 1443.100 kb on + strandat 1443.101 kb on - strandat 1443.276 kb on + strandat 1443.318 kb on - strandat 1443.365 kb on - strandat 1443.400 kb on - strandat 1443.404 kb on + strandat 1443.404 kb on + strandat 1443.404 kb on + strandat 1443.405 kb on - strandat 1443.405 kb on - strandat 1443.415 kb on - strandat 1443.430 kb on - strandat 1443.438 kb on - strandat 1443.502 kb on + strandat 1443.503 kb on - strandat 1443.503 kb on - strandat 1443.507 kb on + strandat 1443.688 kb on - strand, within CA264_06200at 1443.717 kb on + strand, within CA264_06200at 1443.748 kb on - strand, within CA264_06200at 1443.759 kb on + strand, within CA264_06200at 1443.857 kb on + strand, within CA264_06200at 1443.857 kb on + strand, within CA264_06200at 1443.857 kb on + strand, within CA264_06200at 1443.858 kb on - strand, within CA264_06200at 1443.858 kb on - strand, within CA264_06200at 1443.901 kb on + strand, within CA264_06200at 1443.902 kb on - strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,441,778 - CA264_06190 0.13 -0.8
1,441,779 + CA264_06190 0.13 -0.4
1,441,780 - CA264_06190 0.14 +0.7
1,441,841 + CA264_06190 0.20 -0.0
1,441,865 + CA264_06190 0.22 -0.3
1,441,865 + CA264_06190 0.22 -0.3
1,441,866 - CA264_06190 0.23 +0.3
1,441,866 - CA264_06190 0.23 +0.2
1,441,869 + CA264_06190 0.23 -0.1
1,441,869 + CA264_06190 0.23 -1.7
1,441,870 - CA264_06190 0.23 -0.3
1,441,890 + CA264_06190 0.25 +0.0
1,441,900 + CA264_06190 0.26 +0.2
1,441,901 - CA264_06190 0.26 -0.1
1,441,901 - CA264_06190 0.26 -0.0
1,441,966 - CA264_06190 0.33 -0.8
1,441,977 - CA264_06190 0.34 +0.1
1,442,122 + CA264_06190 0.49 -0.4
1,442,148 - CA264_06190 0.52 -0.3
1,442,159 - CA264_06190 0.53 +2.1
1,442,339 - CA264_06190 0.72 +0.9
1,442,339 - CA264_06190 0.72 +0.2
1,442,342 - CA264_06190 0.72 +1.2
1,442,410 + CA264_06190 0.79 -0.3
1,442,410 + CA264_06190 0.79 -0.3
1,442,600 - -0.2
1,442,663 - -1.4
1,442,703 + +0.1
1,442,765 - +0.0
1,442,794 + CA264_06195 0.13 +1.8
1,442,914 + CA264_06195 0.79 -2.0
1,442,915 - CA264_06195 0.79 -0.0
1,442,923 + CA264_06195 0.84 -0.5
1,443,100 + -0.1
1,443,100 + -1.5
1,443,101 - -0.3
1,443,276 + -0.8
1,443,318 - +0.1
1,443,365 - +0.1
1,443,400 - -0.8
1,443,404 + +1.0
1,443,404 + -1.8
1,443,404 + -0.4
1,443,405 - +0.0
1,443,405 - +0.4
1,443,415 - -0.1
1,443,430 - -0.4
1,443,438 - -0.4
1,443,502 + +0.9
1,443,503 - -0.2
1,443,503 - +0.3
1,443,507 + -0.3
1,443,688 - CA264_06200 0.20 -0.5
1,443,717 + CA264_06200 0.24 -0.0
1,443,748 - CA264_06200 0.28 -2.1
1,443,759 + CA264_06200 0.30 +0.7
1,443,857 + CA264_06200 0.43 -0.6
1,443,857 + CA264_06200 0.43 +1.2
1,443,857 + CA264_06200 0.43 -1.1
1,443,858 - CA264_06200 0.43 -0.4
1,443,858 - CA264_06200 0.43 -0.9
1,443,901 + CA264_06200 0.49 +0.3
1,443,902 - CA264_06200 0.49 +0.1
1,443,950 + CA264_06200 0.56 +0.1
1,443,950 + CA264_06200 0.56 +1.0
1,443,950 + CA264_06200 0.56 -0.1
1,443,950 + CA264_06200 0.56 -0.0

Or see this region's nucleotide sequence