Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04730

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04720 and CA264_04725 are separated by 130 nucleotidesCA264_04725 and CA264_04730 are separated by 100 nucleotidesCA264_04730 and CA264_04735 are separated by 96 nucleotides CA264_04720: CA264_04720 - SAM-dependent methyltransferase, at 1,093,428 to 1,094,171 _04720 CA264_04725: CA264_04725 - Co2+/Mg2+ efflux protein ApaG, at 1,094,302 to 1,094,688 _04725 CA264_04730: CA264_04730 - uracil-DNA glycosylase, at 1,094,789 to 1,095,451 _04730 CA264_04735: CA264_04735 - hypothetical protein, at 1,095,548 to 1,097,092 _04735 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -3 -2 -1 0 1at 1094.202 kb on + strandat 1094.219 kb on + strandat 1094.286 kb on + strandat 1094.286 kb on + strandat 1094.286 kb on + strandat 1094.290 kb on - strandat 1094.290 kb on - strandat 1094.292 kb on + strandat 1094.292 kb on + strandat 1094.303 kb on + strandat 1094.315 kb on + strandat 1094.316 kb on - strandat 1094.387 kb on + strand, within CA264_04725at 1094.388 kb on - strand, within CA264_04725at 1094.438 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.528 kb on - strand, within CA264_04725at 1094.531 kb on + strand, within CA264_04725at 1094.532 kb on - strand, within CA264_04725at 1094.590 kb on - strand, within CA264_04725at 1094.590 kb on - strand, within CA264_04725at 1094.639 kb on + strand, within CA264_04725at 1094.705 kb on + strandat 1094.711 kb on + strandat 1094.712 kb on - strandat 1094.712 kb on - strandat 1094.712 kb on - strandat 1094.780 kb on - strandat 1094.797 kb on - strandat 1094.802 kb on + strandat 1094.849 kb on + strandat 1094.862 kb on + strand, within CA264_04730at 1094.885 kb on + strand, within CA264_04730at 1094.886 kb on - strand, within CA264_04730at 1094.887 kb on + strand, within CA264_04730at 1094.887 kb on + strand, within CA264_04730at 1094.888 kb on - strand, within CA264_04730at 1094.888 kb on - strand, within CA264_04730at 1094.970 kb on + strand, within CA264_04730at 1095.043 kb on + strand, within CA264_04730at 1095.043 kb on + strand, within CA264_04730at 1095.064 kb on + strand, within CA264_04730at 1095.079 kb on + strand, within CA264_04730at 1095.080 kb on - strand, within CA264_04730at 1095.080 kb on - strand, within CA264_04730at 1095.288 kb on - strand, within CA264_04730at 1095.414 kb on - strandat 1095.414 kb on - strandat 1095.414 kb on - strandat 1095.417 kb on + strandat 1095.512 kb on + strandat 1095.518 kb on + strandat 1095.519 kb on - strandat 1095.521 kb on - strandat 1095.538 kb on + strandat 1095.540 kb on + strandat 1095.540 kb on + strandat 1095.652 kb on + strandat 1095.652 kb on + strandat 1095.653 kb on - strandat 1095.653 kb on - strandat 1095.653 kb on - strandat 1095.655 kb on - strandat 1095.671 kb on + strandat 1095.672 kb on - strandat 1095.865 kb on + strand, within CA264_04735at 1095.893 kb on + strand, within CA264_04735at 1095.893 kb on + strand, within CA264_04735at 1095.894 kb on - strand, within CA264_04735at 1095.894 kb on - strand, within CA264_04735at 1095.895 kb on + strand, within CA264_04735at 1095.896 kb on - strand, within CA264_04735at 1095.920 kb on - strand, within CA264_04735at 1095.926 kb on - strand, within CA264_04735at 1095.958 kb on + strand, within CA264_04735at 1095.958 kb on + strand, within CA264_04735at 1095.958 kb on + strand, within CA264_04735at 1095.959 kb on - strand, within CA264_04735at 1095.979 kb on - strand, within CA264_04735at 1095.999 kb on + strand, within CA264_04735at 1096.077 kb on - strand, within CA264_04735at 1096.088 kb on - strand, within CA264_04735at 1096.104 kb on + strand, within CA264_04735at 1096.105 kb on - strand, within CA264_04735at 1096.135 kb on - strand, within CA264_04735at 1096.219 kb on + strand, within CA264_04735at 1096.245 kb on + strand, within CA264_04735at 1096.279 kb on + strand, within CA264_04735at 1096.281 kb on + strand, within CA264_04735at 1096.281 kb on + strand, within CA264_04735at 1096.282 kb on - strand, within CA264_04735at 1096.325 kb on + strand, within CA264_04735at 1096.348 kb on - strand, within CA264_04735at 1096.354 kb on - strand, within CA264_04735at 1096.363 kb on + strand, within CA264_04735at 1096.387 kb on - strand, within CA264_04735at 1096.405 kb on - strand, within CA264_04735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
1,094,202 + -0.5
1,094,219 + -0.1
1,094,286 + -0.8
1,094,286 + -0.3
1,094,286 + -0.4
1,094,290 - -0.6
1,094,290 - +0.2
1,094,292 + +1.0
1,094,292 + -0.7
1,094,303 + -0.3
1,094,315 + -0.2
1,094,316 - -0.1
1,094,387 + CA264_04725 0.22 -1.1
1,094,388 - CA264_04725 0.22 -2.0
1,094,438 + CA264_04725 0.35 -1.1
1,094,527 + CA264_04725 0.58 -2.0
1,094,527 + CA264_04725 0.58 +0.3
1,094,527 + CA264_04725 0.58 -1.8
1,094,527 + CA264_04725 0.58 -0.7
1,094,528 - CA264_04725 0.58 +0.1
1,094,531 + CA264_04725 0.59 -0.1
1,094,532 - CA264_04725 0.59 -0.8
1,094,590 - CA264_04725 0.74 -1.3
1,094,590 - CA264_04725 0.74 -0.4
1,094,639 + CA264_04725 0.87 -2.9
1,094,705 + -0.3
1,094,711 + +1.1
1,094,712 - +1.0
1,094,712 - -1.9
1,094,712 - -0.8
1,094,780 - -1.0
1,094,797 - -1.0
1,094,802 + +0.1
1,094,849 + +1.5
1,094,862 + CA264_04730 0.11 -0.8
1,094,885 + CA264_04730 0.14 -0.4
1,094,886 - CA264_04730 0.15 -0.9
1,094,887 + CA264_04730 0.15 +0.2
1,094,887 + CA264_04730 0.15 -0.4
1,094,888 - CA264_04730 0.15 -0.4
1,094,888 - CA264_04730 0.15 -0.8
1,094,970 + CA264_04730 0.27 +0.1
1,095,043 + CA264_04730 0.38 -1.2
1,095,043 + CA264_04730 0.38 -1.2
1,095,064 + CA264_04730 0.41 -0.2
1,095,079 + CA264_04730 0.44 -1.0
1,095,080 - CA264_04730 0.44 +0.8
1,095,080 - CA264_04730 0.44 -0.8
1,095,288 - CA264_04730 0.75 -0.2
1,095,414 - -0.9
1,095,414 - -1.0
1,095,414 - +0.2
1,095,417 + +0.2
1,095,512 + +0.4
1,095,518 + +0.4
1,095,519 - -0.8
1,095,521 - +0.5
1,095,538 + +0.1
1,095,540 + -0.3
1,095,540 + +0.7
1,095,652 + -0.3
1,095,652 + +0.1
1,095,653 - -1.4
1,095,653 - +0.3
1,095,653 - -0.6
1,095,655 - -0.4
1,095,671 + +1.0
1,095,672 - -0.4
1,095,865 + CA264_04735 0.21 +1.4
1,095,893 + CA264_04735 0.22 +0.7
1,095,893 + CA264_04735 0.22 +0.9
1,095,894 - CA264_04735 0.22 -1.1
1,095,894 - CA264_04735 0.22 -0.2
1,095,895 + CA264_04735 0.22 +0.2
1,095,896 - CA264_04735 0.23 -0.4
1,095,920 - CA264_04735 0.24 +1.0
1,095,926 - CA264_04735 0.24 -0.7
1,095,958 + CA264_04735 0.27 -0.8
1,095,958 + CA264_04735 0.27 -0.4
1,095,958 + CA264_04735 0.27 +0.1
1,095,959 - CA264_04735 0.27 -0.8
1,095,979 - CA264_04735 0.28 +0.0
1,095,999 + CA264_04735 0.29 -1.1
1,096,077 - CA264_04735 0.34 -0.6
1,096,088 - CA264_04735 0.35 -0.3
1,096,104 + CA264_04735 0.36 +0.1
1,096,105 - CA264_04735 0.36 -0.4
1,096,135 - CA264_04735 0.38 -1.5
1,096,219 + CA264_04735 0.43 +0.6
1,096,245 + CA264_04735 0.45 +0.2
1,096,279 + CA264_04735 0.47 -0.6
1,096,281 + CA264_04735 0.47 +0.8
1,096,281 + CA264_04735 0.47 +0.1
1,096,282 - CA264_04735 0.48 -0.6
1,096,325 + CA264_04735 0.50 +0.1
1,096,348 - CA264_04735 0.52 +0.0
1,096,354 - CA264_04735 0.52 -0.4
1,096,363 + CA264_04735 0.53 -0.3
1,096,387 - CA264_04735 0.54 +1.2
1,096,405 - CA264_04735 0.55 -0.2

Or see this region's nucleotide sequence