Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04565

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04560 and CA264_04565 are separated by 8 nucleotidesCA264_04565 and CA264_04570 are separated by 91 nucleotides CA264_04560: CA264_04560 - histidine ammonia-lyase, at 1,053,306 to 1,054,796 _04560 CA264_04565: CA264_04565 - histidine--tRNA ligase, at 1,054,805 to 1,056,202 _04565 CA264_04570: CA264_04570 - undecaprenyl-phosphate glucose phosphotransferase, at 1,056,294 to 1,057,667 _04570 Position (kb) 1054 1055 1056 1057Strain fitness (log2 ratio) -1 0 1 2at 1053.934 kb on - strand, within CA264_04560at 1053.969 kb on + strand, within CA264_04560at 1053.970 kb on - strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.190 kb on + strand, within CA264_04560at 1054.298 kb on - strand, within CA264_04560at 1054.332 kb on + strand, within CA264_04560at 1054.333 kb on - strand, within CA264_04560at 1054.477 kb on - strand, within CA264_04560at 1054.494 kb on - strand, within CA264_04560at 1054.500 kb on + strand, within CA264_04560at 1054.556 kb on + strand, within CA264_04560at 1054.723 kb on + strandat 1054.778 kb on + strandat 1054.780 kb on + strandat 1054.780 kb on + strandat 1054.780 kb on + strandat 1054.781 kb on - strandat 1054.785 kb on + strandat 1054.807 kb on - strandat 1056.229 kb on - strandat 1056.232 kb on - strandat 1056.277 kb on - strandat 1056.296 kb on - strandat 1056.321 kb on - strandat 1056.327 kb on - strandat 1056.327 kb on - strandat 1056.327 kb on - strandat 1056.328 kb on + strandat 1056.328 kb on + strandat 1056.330 kb on + strandat 1056.332 kb on - strandat 1056.337 kb on + strandat 1056.337 kb on + strandat 1056.400 kb on - strandat 1056.402 kb on - strandat 1056.418 kb on + strandat 1056.418 kb on + strandat 1056.537 kb on + strand, within CA264_04570at 1056.587 kb on + strand, within CA264_04570at 1056.601 kb on - strand, within CA264_04570at 1056.693 kb on + strand, within CA264_04570at 1056.694 kb on - strand, within CA264_04570at 1056.694 kb on - strand, within CA264_04570at 1056.750 kb on + strand, within CA264_04570at 1056.801 kb on + strand, within CA264_04570at 1056.802 kb on - strand, within CA264_04570at 1056.802 kb on - strand, within CA264_04570at 1056.813 kb on + strand, within CA264_04570at 1056.837 kb on + strand, within CA264_04570at 1056.837 kb on + strand, within CA264_04570at 1056.842 kb on + strand, within CA264_04570at 1056.843 kb on - strand, within CA264_04570at 1056.915 kb on + strand, within CA264_04570at 1056.927 kb on + strand, within CA264_04570at 1056.968 kb on - strand, within CA264_04570at 1057.008 kb on - strand, within CA264_04570at 1057.023 kb on + strand, within CA264_04570at 1057.069 kb on + strand, within CA264_04570at 1057.070 kb on - strand, within CA264_04570at 1057.070 kb on - strand, within CA264_04570at 1057.070 kb on - strand, within CA264_04570at 1057.116 kb on + strand, within CA264_04570at 1057.129 kb on + strand, within CA264_04570at 1057.155 kb on - strand, within CA264_04570at 1057.179 kb on - strand, within CA264_04570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,053,934 - CA264_04560 0.42 +1.2
1,053,969 + CA264_04560 0.44 +1.9
1,053,970 - CA264_04560 0.45 +1.9
1,054,169 + CA264_04560 0.58 +2.1
1,054,169 + CA264_04560 0.58 +2.0
1,054,169 + CA264_04560 0.58 +1.8
1,054,169 + CA264_04560 0.58 +2.3
1,054,190 + CA264_04560 0.59 +1.6
1,054,298 - CA264_04560 0.67 +1.7
1,054,332 + CA264_04560 0.69 +1.7
1,054,333 - CA264_04560 0.69 +1.1
1,054,477 - CA264_04560 0.79 +1.5
1,054,494 - CA264_04560 0.80 +1.7
1,054,500 + CA264_04560 0.80 +1.6
1,054,556 + CA264_04560 0.84 +1.8
1,054,723 + +1.5
1,054,778 + +1.7
1,054,780 + +1.5
1,054,780 + +1.2
1,054,780 + +1.8
1,054,781 - +2.2
1,054,785 + +0.3
1,054,807 - +0.3
1,056,229 - -0.5
1,056,232 - -1.2
1,056,277 - -0.2
1,056,296 - +0.4
1,056,321 - -0.7
1,056,327 - -1.4
1,056,327 - -1.6
1,056,327 - -0.7
1,056,328 + +0.4
1,056,328 + +1.1
1,056,330 + -0.1
1,056,332 - -0.6
1,056,337 + +0.4
1,056,337 + +0.4
1,056,400 - +0.1
1,056,402 - -0.3
1,056,418 + -1.1
1,056,418 + +0.1
1,056,537 + CA264_04570 0.18 -0.3
1,056,587 + CA264_04570 0.21 -0.0
1,056,601 - CA264_04570 0.22 +1.4
1,056,693 + CA264_04570 0.29 +0.1
1,056,694 - CA264_04570 0.29 +0.4
1,056,694 - CA264_04570 0.29 -0.6
1,056,750 + CA264_04570 0.33 +0.3
1,056,801 + CA264_04570 0.37 +0.9
1,056,802 - CA264_04570 0.37 -0.4
1,056,802 - CA264_04570 0.37 -0.2
1,056,813 + CA264_04570 0.38 -0.5
1,056,837 + CA264_04570 0.40 +0.1
1,056,837 + CA264_04570 0.40 +0.5
1,056,842 + CA264_04570 0.40 +0.7
1,056,843 - CA264_04570 0.40 +1.0
1,056,915 + CA264_04570 0.45 -0.1
1,056,927 + CA264_04570 0.46 -1.1
1,056,968 - CA264_04570 0.49 +0.7
1,057,008 - CA264_04570 0.52 -0.8
1,057,023 + CA264_04570 0.53 -0.4
1,057,069 + CA264_04570 0.56 -0.3
1,057,070 - CA264_04570 0.56 +0.1
1,057,070 - CA264_04570 0.56 -0.3
1,057,070 - CA264_04570 0.56 +0.4
1,057,116 + CA264_04570 0.60 -0.4
1,057,129 + CA264_04570 0.61 +0.5
1,057,155 - CA264_04570 0.63 +1.4
1,057,179 - CA264_04570 0.64 -0.4

Or see this region's nucleotide sequence