Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02165

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02160 and CA264_02165 are separated by 231 nucleotidesCA264_02165 and CA264_02170 are separated by 144 nucleotides CA264_02160: CA264_02160 - hypothetical protein, at 497,698 to 498,264 _02160 CA264_02165: CA264_02165 - dihydrolipoyl dehydrogenase, at 498,496 to 499,890 _02165 CA264_02170: CA264_02170 - hypothetical protein, at 500,035 to 500,799 _02170 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1 2at 497.518 kb on + strandat 497.553 kb on + strandat 497.553 kb on + strandat 497.553 kb on + strandat 497.554 kb on - strandat 497.684 kb on + strandat 497.684 kb on + strandat 497.699 kb on + strandat 497.700 kb on - strandat 497.712 kb on + strandat 497.713 kb on - strandat 497.721 kb on - strandat 497.796 kb on + strand, within CA264_02160at 497.796 kb on + strand, within CA264_02160at 497.819 kb on + strand, within CA264_02160at 497.822 kb on + strand, within CA264_02160at 497.863 kb on - strand, within CA264_02160at 497.863 kb on - strand, within CA264_02160at 497.863 kb on - strand, within CA264_02160at 497.863 kb on - strand, within CA264_02160at 497.865 kb on - strand, within CA264_02160at 497.886 kb on - strand, within CA264_02160at 497.925 kb on - strand, within CA264_02160at 497.965 kb on - strand, within CA264_02160at 497.988 kb on - strand, within CA264_02160at 497.988 kb on - strand, within CA264_02160at 498.002 kb on + strand, within CA264_02160at 498.003 kb on - strand, within CA264_02160at 498.026 kb on + strand, within CA264_02160at 498.027 kb on - strand, within CA264_02160at 498.027 kb on - strand, within CA264_02160at 498.027 kb on - strand, within CA264_02160at 498.170 kb on + strand, within CA264_02160at 498.307 kb on - strandat 498.307 kb on - strandat 498.316 kb on + strandat 498.317 kb on - strandat 498.322 kb on + strandat 498.322 kb on + strandat 498.340 kb on + strandat 498.341 kb on - strandat 498.361 kb on + strandat 498.481 kb on + strandat 498.483 kb on + strandat 499.888 kb on + strandat 499.888 kb on + strandat 499.888 kb on + strandat 499.889 kb on - strandat 499.914 kb on - strandat 499.953 kb on + strandat 500.022 kb on - strandat 500.027 kb on + strandat 500.027 kb on + strandat 500.028 kb on - strandat 500.028 kb on - strandat 500.029 kb on + strandat 500.029 kb on + strandat 500.029 kb on + strandat 500.029 kb on + strandat 500.030 kb on - strandat 500.035 kb on - strandat 500.055 kb on - strandat 500.244 kb on + strand, within CA264_02170at 500.245 kb on - strand, within CA264_02170at 500.347 kb on + strand, within CA264_02170at 500.527 kb on - strand, within CA264_02170at 500.527 kb on - strand, within CA264_02170at 500.533 kb on + strand, within CA264_02170at 500.549 kb on - strand, within CA264_02170at 500.587 kb on + strand, within CA264_02170at 500.588 kb on - strand, within CA264_02170at 500.632 kb on + strand, within CA264_02170at 500.632 kb on + strand, within CA264_02170at 500.662 kb on + strand, within CA264_02170at 500.662 kb on + strand, within CA264_02170at 500.663 kb on - strand, within CA264_02170at 500.684 kb on - strand, within CA264_02170at 500.765 kb on + strandat 500.766 kb on - strandat 500.889 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
497,518 + -0.2
497,553 + +0.1
497,553 + -0.0
497,553 + +0.0
497,554 - +0.4
497,684 + +0.1
497,684 + -0.0
497,699 + +1.0
497,700 - +0.2
497,712 + -0.6
497,713 - +0.4
497,721 - +0.5
497,796 + CA264_02160 0.17 +0.7
497,796 + CA264_02160 0.17 -1.0
497,819 + CA264_02160 0.21 -1.1
497,822 + CA264_02160 0.22 -0.3
497,863 - CA264_02160 0.29 -0.2
497,863 - CA264_02160 0.29 +0.4
497,863 - CA264_02160 0.29 +0.1
497,863 - CA264_02160 0.29 -0.7
497,865 - CA264_02160 0.29 +1.7
497,886 - CA264_02160 0.33 -1.3
497,925 - CA264_02160 0.40 -0.6
497,965 - CA264_02160 0.47 +0.7
497,988 - CA264_02160 0.51 -0.2
497,988 - CA264_02160 0.51 +0.0
498,002 + CA264_02160 0.54 +1.1
498,003 - CA264_02160 0.54 +1.0
498,026 + CA264_02160 0.58 +0.1
498,027 - CA264_02160 0.58 +0.2
498,027 - CA264_02160 0.58 -0.0
498,027 - CA264_02160 0.58 -0.7
498,170 + CA264_02160 0.83 -0.5
498,307 - +0.2
498,307 - -0.2
498,316 + +0.4
498,317 - -0.5
498,322 + +0.7
498,322 + +0.4
498,340 + -0.2
498,341 - -0.2
498,361 + -0.1
498,481 + -0.3
498,483 + -1.0
499,888 + -0.3
499,888 + +0.3
499,888 + +1.0
499,889 - +0.4
499,914 - -1.9
499,953 + +0.7
500,022 - +1.9
500,027 + +0.6
500,027 + -0.0
500,028 - +1.2
500,028 - -0.2
500,029 + +0.0
500,029 + -0.8
500,029 + -0.3
500,029 + -0.4
500,030 - +1.0
500,035 - +0.3
500,055 - +0.1
500,244 + CA264_02170 0.27 -0.6
500,245 - CA264_02170 0.27 -0.0
500,347 + CA264_02170 0.41 +1.0
500,527 - CA264_02170 0.64 -1.1
500,527 - CA264_02170 0.64 +0.2
500,533 + CA264_02170 0.65 +0.6
500,549 - CA264_02170 0.67 +0.8
500,587 + CA264_02170 0.72 +1.1
500,588 - CA264_02170 0.72 +0.1
500,632 + CA264_02170 0.78 +0.8
500,632 + CA264_02170 0.78 -0.9
500,662 + CA264_02170 0.82 +0.1
500,662 + CA264_02170 0.82 +0.3
500,663 - CA264_02170 0.82 +0.1
500,684 - CA264_02170 0.85 -0.2
500,765 + -0.1
500,766 - +0.4
500,889 + -1.0

Or see this region's nucleotide sequence