Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02015

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02005 and CA264_02010 are separated by 158 nucleotidesCA264_02010 and CA264_02015 are separated by 161 nucleotidesCA264_02015 and CA264_02020 are separated by 144 nucleotides CA264_02005: CA264_02005 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 461,546 to 462,958 _02005 CA264_02010: CA264_02010 - hypothetical protein, at 463,117 to 463,485 _02010 CA264_02015: CA264_02015 - thiamine-phosphate kinase, at 463,647 to 464,672 _02015 CA264_02020: CA264_02020 - histidinol-phosphate transaminase, at 464,817 to 466,964 _02020 Position (kb) 463 464 465Strain fitness (log2 ratio) -2 -1 0 1 2at 462.672 kb on - strand, within CA264_02005at 462.876 kb on - strandat 462.876 kb on - strandat 462.882 kb on + strandat 462.937 kb on - strandat 462.937 kb on - strandat 462.939 kb on + strandat 462.939 kb on + strandat 462.940 kb on - strandat 462.940 kb on - strandat 462.940 kb on - strandat 462.952 kb on + strandat 462.952 kb on + strandat 462.953 kb on - strandat 462.956 kb on + strandat 462.956 kb on + strandat 462.956 kb on + strandat 462.957 kb on - strandat 462.977 kb on - strandat 462.977 kb on - strandat 463.037 kb on - strandat 463.037 kb on - strandat 463.096 kb on + strandat 463.097 kb on - strandat 463.143 kb on + strandat 463.320 kb on + strand, within CA264_02010at 463.323 kb on + strand, within CA264_02010at 463.324 kb on - strand, within CA264_02010at 463.324 kb on - strand, within CA264_02010at 463.334 kb on - strand, within CA264_02010at 463.348 kb on - strand, within CA264_02010at 463.349 kb on + strand, within CA264_02010at 463.389 kb on + strand, within CA264_02010at 463.390 kb on - strand, within CA264_02010at 463.400 kb on - strand, within CA264_02010at 463.401 kb on + strand, within CA264_02010at 463.465 kb on - strandat 463.505 kb on - strandat 463.515 kb on + strandat 463.516 kb on - strandat 463.537 kb on + strandat 463.537 kb on + strandat 463.541 kb on + strandat 463.542 kb on - strandat 463.542 kb on - strandat 463.561 kb on - strandat 463.561 kb on - strandat 463.563 kb on + strandat 463.563 kb on + strandat 463.564 kb on - strandat 463.564 kb on - strandat 463.564 kb on - strandat 463.603 kb on + strandat 463.611 kb on + strandat 463.611 kb on + strandat 463.612 kb on - strandat 463.622 kb on - strandat 463.622 kb on - strandat 463.631 kb on + strandat 464.672 kb on + strandat 464.676 kb on + strandat 464.677 kb on - strandat 464.677 kb on - strandat 464.793 kb on + strandat 464.819 kb on - strandat 464.819 kb on - strandat 464.925 kb on + strandat 464.925 kb on + strandat 465.082 kb on - strand, within CA264_02020at 465.140 kb on - strand, within CA264_02020at 465.140 kb on - strand, within CA264_02020at 465.366 kb on + strand, within CA264_02020at 465.366 kb on + strand, within CA264_02020at 465.367 kb on - strand, within CA264_02020at 465.398 kb on - strand, within CA264_02020at 465.435 kb on + strand, within CA264_02020at 465.436 kb on - strand, within CA264_02020at 465.436 kb on - strand, within CA264_02020at 465.436 kb on - strand, within CA264_02020at 465.510 kb on - strand, within CA264_02020at 465.592 kb on - strand, within CA264_02020at 465.600 kb on + strand, within CA264_02020

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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462,672 - CA264_02005 0.80 -1.2
462,876 - +1.9
462,876 - -0.9
462,882 + -0.6
462,937 - -0.6
462,937 - +0.0
462,939 + +1.4
462,939 + -0.5
462,940 - +0.1
462,940 - -2.5
462,940 - +0.2
462,952 + -0.4
462,952 + -0.3
462,953 - -0.6
462,956 + +1.4
462,956 + -0.1
462,956 + -0.8
462,957 - -2.2
462,977 - -0.2
462,977 - -0.3
463,037 - -0.9
463,037 - -0.5
463,096 + -2.1
463,097 - +0.6
463,143 + +0.0
463,320 + CA264_02010 0.55 -0.7
463,323 + CA264_02010 0.56 -0.7
463,324 - CA264_02010 0.56 -0.5
463,324 - CA264_02010 0.56 -0.7
463,334 - CA264_02010 0.59 -0.5
463,348 - CA264_02010 0.63 -0.8
463,349 + CA264_02010 0.63 -0.6
463,389 + CA264_02010 0.74 -0.7
463,390 - CA264_02010 0.74 -0.4
463,400 - CA264_02010 0.77 -0.9
463,401 + CA264_02010 0.77 -1.5
463,465 - +0.7
463,505 - -0.8
463,515 + -0.0
463,516 - +0.2
463,537 + -1.0
463,537 + -0.1
463,541 + -0.0
463,542 - -0.7
463,542 - -0.7
463,561 - -0.3
463,561 - -1.1
463,563 + +0.5
463,563 + +0.7
463,564 - -0.7
463,564 - -0.7
463,564 - -1.7
463,603 + -0.3
463,611 + -0.2
463,611 + -0.3
463,612 - +0.5
463,622 - -0.1
463,622 - +1.1
463,631 + +0.1
464,672 + +2.7
464,676 + -1.4
464,677 - -0.3
464,677 - +1.8
464,793 + -0.6
464,819 - +0.3
464,819 - +0.1
464,925 + +0.6
464,925 + +0.2
465,082 - CA264_02020 0.12 -0.4
465,140 - CA264_02020 0.15 +0.2
465,140 - CA264_02020 0.15 -0.0
465,366 + CA264_02020 0.26 -0.1
465,366 + CA264_02020 0.26 -0.6
465,367 - CA264_02020 0.26 -0.1
465,398 - CA264_02020 0.27 -1.2
465,435 + CA264_02020 0.29 -0.7
465,436 - CA264_02020 0.29 -0.1
465,436 - CA264_02020 0.29 -1.1
465,436 - CA264_02020 0.29 +0.2
465,510 - CA264_02020 0.32 -0.0
465,592 - CA264_02020 0.36 +0.3
465,600 + CA264_02020 0.36 +0.1

Or see this region's nucleotide sequence