Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23645 and ABIE41_RS23650 are separated by 99 nucleotides ABIE41_RS23650 and ABIE41_RS23655 overlap by 4 nucleotides ABIE41_RS23655 and ABIE41_RS23660 are separated by 8 nucleotides
ABIE41_RS23645: ABIE41_RS23645 - histidine ammonia-lyase, at 4,872,218 to 4,873,753
_RS23645
ABIE41_RS23650: ABIE41_RS23650 - N-formylglutamate deformylase, at 4,873,853 to 4,874,659
_RS23650
ABIE41_RS23655: ABIE41_RS23655 - urocanate hydratase, at 4,874,656 to 4,876,326
_RS23655
ABIE41_RS23660: ABIE41_RS23660 - flavin oxidoreductase, at 4,876,335 to 4,877,483
_RS23660
Position (kb) 4874
4875
4876
4877 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4873.656 kb on - strand at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.003 kb on + strand, within ABIE41_RS23650 at 4874.004 kb on - strand, within ABIE41_RS23650 at 4874.004 kb on - strand, within ABIE41_RS23650 at 4874.099 kb on + strand, within ABIE41_RS23650 at 4874.131 kb on + strand, within ABIE41_RS23650 at 4874.208 kb on - strand, within ABIE41_RS23650 at 4874.219 kb on + strand, within ABIE41_RS23650 at 4874.271 kb on - strand, within ABIE41_RS23650 at 4874.475 kb on - strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.531 kb on + strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.532 kb on - strand, within ABIE41_RS23650 at 4874.803 kb on + strand at 4874.983 kb on + strand, within ABIE41_RS23655 at 4874.984 kb on - strand, within ABIE41_RS23655 at 4875.015 kb on + strand, within ABIE41_RS23655 at 4875.034 kb on + strand, within ABIE41_RS23655 at 4875.035 kb on - strand, within ABIE41_RS23655 at 4875.035 kb on - strand, within ABIE41_RS23655 at 4875.035 kb on - strand, within ABIE41_RS23655 at 4875.064 kb on + strand, within ABIE41_RS23655 at 4875.064 kb on + strand, within ABIE41_RS23655 at 4875.064 kb on + strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.065 kb on - strand, within ABIE41_RS23655 at 4875.097 kb on + strand, within ABIE41_RS23655 at 4875.097 kb on + strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.098 kb on - strand, within ABIE41_RS23655 at 4875.130 kb on + strand, within ABIE41_RS23655 at 4875.130 kb on + strand, within ABIE41_RS23655 at 4875.231 kb on - strand, within ABIE41_RS23655 at 4875.280 kb on + strand, within ABIE41_RS23655 at 4875.470 kb on - strand, within ABIE41_RS23655 at 4875.617 kb on - strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.694 kb on + strand, within ABIE41_RS23655 at 4875.695 kb on - strand, within ABIE41_RS23655 at 4875.697 kb on - strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.769 kb on + strand, within ABIE41_RS23655 at 4875.770 kb on - strand, within ABIE41_RS23655 at 4876.141 kb on + strand, within ABIE41_RS23655 at 4876.319 kb on + strand at 4876.319 kb on + strand at 4876.319 kb on + strand at 4876.320 kb on - strand at 4876.320 kb on - strand at 4876.482 kb on + strand, within ABIE41_RS23660 at 4876.482 kb on + strand, within ABIE41_RS23660 at 4876.675 kb on + strand, within ABIE41_RS23660 at 4876.676 kb on - strand, within ABIE41_RS23660 at 4876.676 kb on - strand, within ABIE41_RS23660 at 4876.735 kb on + strand, within ABIE41_RS23660 at 4876.735 kb on + strand, within ABIE41_RS23660 at 4876.735 kb on + strand, within ABIE41_RS23660 at 4876.736 kb on - strand, within ABIE41_RS23660 at 4876.736 kb on - strand, within ABIE41_RS23660 at 4876.736 kb on - strand, within ABIE41_RS23660 at 4876.792 kb on + strand, within ABIE41_RS23660 at 4876.792 kb on + strand, within ABIE41_RS23660 at 4876.969 kb on + strand, within ABIE41_RS23660 at 4876.969 kb on + strand, within ABIE41_RS23660 at 4876.970 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.180 kb on - strand, within ABIE41_RS23660 at 4877.302 kb on + strand, within ABIE41_RS23660 at 4877.302 kb on + strand, within ABIE41_RS23660 at 4877.303 kb on - strand, within ABIE41_RS23660 at 4877.303 kb on - strand, within ABIE41_RS23660
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,873,656 - +0.1 4,874,003 + ABIE41_RS23650 0.19 +0.4 4,874,003 + ABIE41_RS23650 0.19 +0.2 4,874,003 + ABIE41_RS23650 0.19 +0.2 4,874,003 + ABIE41_RS23650 0.19 -0.6 4,874,003 + ABIE41_RS23650 0.19 -1.2 4,874,004 - ABIE41_RS23650 0.19 -1.2 4,874,004 - ABIE41_RS23650 0.19 -0.6 4,874,099 + ABIE41_RS23650 0.30 -0.3 4,874,131 + ABIE41_RS23650 0.34 -1.7 4,874,208 - ABIE41_RS23650 0.44 +0.2 4,874,219 + ABIE41_RS23650 0.45 -0.1 4,874,271 - ABIE41_RS23650 0.52 -0.4 4,874,475 - ABIE41_RS23650 0.77 -1.6 4,874,531 + ABIE41_RS23650 0.84 +0.6 4,874,531 + ABIE41_RS23650 0.84 -0.1 4,874,531 + ABIE41_RS23650 0.84 -0.2 4,874,531 + ABIE41_RS23650 0.84 +1.0 4,874,531 + ABIE41_RS23650 0.84 -1.4 4,874,531 + ABIE41_RS23650 0.84 +1.0 4,874,531 + ABIE41_RS23650 0.84 -2.6 4,874,531 + ABIE41_RS23650 0.84 -0.0 4,874,531 + ABIE41_RS23650 0.84 -0.2 4,874,532 - ABIE41_RS23650 0.84 -0.2 4,874,532 - ABIE41_RS23650 0.84 +0.8 4,874,532 - ABIE41_RS23650 0.84 -0.1 4,874,532 - ABIE41_RS23650 0.84 +1.6 4,874,532 - ABIE41_RS23650 0.84 -1.5 4,874,803 + -2.8 4,874,983 + ABIE41_RS23655 0.20 +0.5 4,874,984 - ABIE41_RS23655 0.20 +0.1 4,875,015 + ABIE41_RS23655 0.21 -3.2 4,875,034 + ABIE41_RS23655 0.23 +0.7 4,875,035 - ABIE41_RS23655 0.23 -0.1 4,875,035 - ABIE41_RS23655 0.23 -0.1 4,875,035 - ABIE41_RS23655 0.23 +0.1 4,875,064 + ABIE41_RS23655 0.24 -0.7 4,875,064 + ABIE41_RS23655 0.24 +1.0 4,875,064 + ABIE41_RS23655 0.24 -2.6 4,875,065 - ABIE41_RS23655 0.24 -0.7 4,875,065 - ABIE41_RS23655 0.24 -0.4 4,875,065 - ABIE41_RS23655 0.24 -1.7 4,875,065 - ABIE41_RS23655 0.24 +0.5 4,875,065 - ABIE41_RS23655 0.24 +0.0 4,875,065 - ABIE41_RS23655 0.24 -0.4 4,875,065 - ABIE41_RS23655 0.24 +0.5 4,875,097 + ABIE41_RS23655 0.26 +1.0 4,875,097 + ABIE41_RS23655 0.26 +1.1 4,875,098 - ABIE41_RS23655 0.26 +0.9 4,875,098 - ABIE41_RS23655 0.26 +0.4 4,875,098 - ABIE41_RS23655 0.26 -0.1 4,875,098 - ABIE41_RS23655 0.26 -1.2 4,875,130 + ABIE41_RS23655 0.28 -0.9 4,875,130 + ABIE41_RS23655 0.28 -0.4 4,875,231 - ABIE41_RS23655 0.34 +0.3 4,875,280 + ABIE41_RS23655 0.37 +0.5 4,875,470 - ABIE41_RS23655 0.49 -0.3 4,875,617 - ABIE41_RS23655 0.58 -0.9 4,875,694 + ABIE41_RS23655 0.62 -2.8 4,875,694 + ABIE41_RS23655 0.62 +1.5 4,875,694 + ABIE41_RS23655 0.62 -2.0 4,875,694 + ABIE41_RS23655 0.62 -0.5 4,875,694 + ABIE41_RS23655 0.62 +0.1 4,875,695 - ABIE41_RS23655 0.62 -3.5 4,875,697 - ABIE41_RS23655 0.62 +0.7 4,875,769 + ABIE41_RS23655 0.67 +0.1 4,875,769 + ABIE41_RS23655 0.67 -0.7 4,875,769 + ABIE41_RS23655 0.67 +0.6 4,875,769 + ABIE41_RS23655 0.67 -0.2 4,875,769 + ABIE41_RS23655 0.67 +0.3 4,875,770 - ABIE41_RS23655 0.67 +0.6 4,876,141 + ABIE41_RS23655 0.89 +0.4 4,876,319 + -0.3 4,876,319 + +1.6 4,876,319 + -0.4 4,876,320 - -0.2 4,876,320 - +0.4 4,876,482 + ABIE41_RS23660 0.13 +0.1 4,876,482 + ABIE41_RS23660 0.13 +0.4 4,876,675 + ABIE41_RS23660 0.30 -4.0 4,876,676 - ABIE41_RS23660 0.30 -3.2 4,876,676 - ABIE41_RS23660 0.30 -1.2 4,876,735 + ABIE41_RS23660 0.35 -0.1 4,876,735 + ABIE41_RS23660 0.35 +0.3 4,876,735 + ABIE41_RS23660 0.35 +0.0 4,876,736 - ABIE41_RS23660 0.35 +0.4 4,876,736 - ABIE41_RS23660 0.35 +0.6 4,876,736 - ABIE41_RS23660 0.35 -0.8 4,876,792 + ABIE41_RS23660 0.40 +0.2 4,876,792 + ABIE41_RS23660 0.40 -0.6 4,876,969 + ABIE41_RS23660 0.55 -1.1 4,876,969 + ABIE41_RS23660 0.55 -0.7 4,876,970 - ABIE41_RS23660 0.55 -1.3 4,877,180 - ABIE41_RS23660 0.74 -0.6 4,877,180 - ABIE41_RS23660 0.74 +1.3 4,877,180 - ABIE41_RS23660 0.74 +2.0 4,877,180 - ABIE41_RS23660 0.74 -1.6 4,877,302 + ABIE41_RS23660 0.84 -0.3 4,877,302 + ABIE41_RS23660 0.84 +0.3 4,877,303 - ABIE41_RS23660 0.84 -1.7 4,877,303 - ABIE41_RS23660 0.84 +0.2
Or see this region's nucleotide sequence