Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15665

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS15655 and ABIE41_RS15660 are separated by 174 nucleotidesABIE41_RS15660 and ABIE41_RS15665 are separated by 22 nucleotidesABIE41_RS15665 and ABIE41_RS15670 overlap by 1 nucleotidesABIE41_RS15670 and ABIE41_RS15675 are separated by 188 nucleotides ABIE41_RS15655: ABIE41_RS15655 - TolC family outer membrane protein, at 3,205,248 to 3,206,645 _RS15655 ABIE41_RS15660: ABIE41_RS15660 - DUF2497 domain-containing protein, at 3,206,820 to 3,207,395 _RS15660 ABIE41_RS15665: ABIE41_RS15665 - hypothetical protein, at 3,207,418 to 3,207,648 _RS15665 ABIE41_RS15670: ABIE41_RS15670 - pyridoxamine 5'-phosphate oxidase family protein, at 3,207,648 to 3,208,133 _RS15670 ABIE41_RS15675: ABIE41_RS15675 - valine--tRNA ligase, at 3,208,322 to 3,211,141 _RS15675 Position (kb) 3207 3208Strain fitness (log2 ratio) -2 -1 0 1at 3206.574 kb on + strandat 3206.574 kb on + strandat 3207.287 kb on + strand, within ABIE41_RS15660at 3207.288 kb on - strand, within ABIE41_RS15660at 3207.288 kb on - strand, within ABIE41_RS15660at 3207.895 kb on + strand, within ABIE41_RS15670at 3207.895 kb on + strand, within ABIE41_RS15670at 3207.896 kb on - strand, within ABIE41_RS15670at 3207.896 kb on - strand, within ABIE41_RS15670at 3208.205 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
3,206,574 + +1.1
3,206,574 + +1.0
3,207,287 + ABIE41_RS15660 0.81 +0.1
3,207,288 - ABIE41_RS15660 0.81 -0.4
3,207,288 - ABIE41_RS15660 0.81 -0.3
3,207,895 + ABIE41_RS15670 0.51 -2.6
3,207,895 + ABIE41_RS15670 0.51 -0.1
3,207,896 - ABIE41_RS15670 0.51 +0.3
3,207,896 - ABIE41_RS15670 0.51 -2.3
3,208,205 + +0.6

Or see this region's nucleotide sequence