Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00285 and ABIE41_RS00290 overlap by 1 nucleotides ABIE41_RS00290 and ABIE41_RS00295 are separated by 145 nucleotides ABIE41_RS00295 and ABIE41_RS00300 are separated by 28 nucleotides
ABIE41_RS00285: ABIE41_RS00285 - ornithine cyclodeaminase family protein, at 48,570 to 49,520
_RS00285
ABIE41_RS00290: ABIE41_RS00290 - LapA family protein, at 49,520 to 49,858
_RS00290
ABIE41_RS00295: ABIE41_RS00295 - integration host factor subunit beta, at 50,004 to 50,288
_RS00295
ABIE41_RS00300: ABIE41_RS00300 - signal peptide peptidase SppA, at 50,317 to 51,285
_RS00300
Position (kb) 50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 49.093 kb on - strand, within ABIE41_RS00285 at 49.093 kb on - strand, within ABIE41_RS00285 at 49.258 kb on + strand, within ABIE41_RS00285 at 49.259 kb on - strand, within ABIE41_RS00285 at 49.259 kb on - strand, within ABIE41_RS00285 at 49.328 kb on + strand, within ABIE41_RS00285 at 49.330 kb on + strand, within ABIE41_RS00285 at 49.729 kb on - strand, within ABIE41_RS00290 at 49.729 kb on - strand, within ABIE41_RS00290 at 50.300 kb on - strand at 50.310 kb on - strand at 50.310 kb on - strand at 50.687 kb on + strand, within ABIE41_RS00300 at 50.687 kb on + strand, within ABIE41_RS00300 at 50.687 kb on + strand, within ABIE41_RS00300 at 50.687 kb on + strand, within ABIE41_RS00300 at 50.688 kb on - strand, within ABIE41_RS00300 at 50.688 kb on - strand, within ABIE41_RS00300 at 50.688 kb on - strand, within ABIE41_RS00300 at 50.984 kb on + strand, within ABIE41_RS00300 at 50.984 kb on + strand, within ABIE41_RS00300 at 50.984 kb on + strand, within ABIE41_RS00300 at 50.984 kb on + strand, within ABIE41_RS00300 at 50.984 kb on + strand, within ABIE41_RS00300 at 50.984 kb on + strand, within ABIE41_RS00300 at 50.985 kb on - strand, within ABIE41_RS00300 at 50.985 kb on - strand, within ABIE41_RS00300 at 50.985 kb on - strand, within ABIE41_RS00300 at 50.985 kb on - strand, within ABIE41_RS00300
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 49,093 - ABIE41_RS00285 0.55 +0.6 49,093 - ABIE41_RS00285 0.55 -0.4 49,258 + ABIE41_RS00285 0.72 +0.5 49,259 - ABIE41_RS00285 0.72 +0.0 49,259 - ABIE41_RS00285 0.72 +1.9 49,328 + ABIE41_RS00285 0.80 +0.7 49,330 + ABIE41_RS00285 0.80 +0.6 49,729 - ABIE41_RS00290 0.62 +0.4 49,729 - ABIE41_RS00290 0.62 -0.1 50,300 - -1.0 50,310 - +0.2 50,310 - -2.8 50,687 + ABIE41_RS00300 0.38 -0.8 50,687 + ABIE41_RS00300 0.38 +0.9 50,687 + ABIE41_RS00300 0.38 -3.1 50,687 + ABIE41_RS00300 0.38 -0.3 50,688 - ABIE41_RS00300 0.38 -0.8 50,688 - ABIE41_RS00300 0.38 +0.3 50,688 - ABIE41_RS00300 0.38 +0.9 50,984 + ABIE41_RS00300 0.69 -1.3 50,984 + ABIE41_RS00300 0.69 -0.1 50,984 + ABIE41_RS00300 0.69 -0.1 50,984 + ABIE41_RS00300 0.69 +0.4 50,984 + ABIE41_RS00300 0.69 -2.9 50,984 + ABIE41_RS00300 0.69 +0.0 50,985 - ABIE41_RS00300 0.69 +0.0 50,985 - ABIE41_RS00300 0.69 -0.6 50,985 - ABIE41_RS00300 0.69 +0.7 50,985 - ABIE41_RS00300 0.69 -0.2
Or see this region's nucleotide sequence