Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20955 and ABID97_RS20960 are separated by 104 nucleotides ABID97_RS20960 and ABID97_RS20965 are separated by 199 nucleotides ABID97_RS20965 and ABID97_RS20970 are separated by 153 nucleotides ABID97_RS20970 and ABID97_RS20975 are separated by 46 nucleotides
ABID97_RS20955: ABID97_RS20955 - SDR family NAD(P)-dependent oxidoreductase, at 4,333,288 to 4,334,214
_RS20955
ABID97_RS20960: ABID97_RS20960 - response regulator transcription factor, at 4,334,319 to 4,334,699
_RS20960
ABID97_RS20965: ABID97_RS20965 - glutamate--cysteine ligase, at 4,334,899 to 4,336,455
_RS20965
ABID97_RS20970: ABID97_RS20970 - putative quinol monooxygenase, at 4,336,609 to 4,336,920
_RS20970
ABID97_RS20975: ABID97_RS20975 - dienelactone hydrolase family protein, at 4,336,967 to 4,337,632
_RS20975
Position (kb) 4334
4335
4336
4337 Strain fitness (log2 ratio) -2
-1
0
1 at 4334.350 kb on + strand at 4334.351 kb on - strand at 4334.441 kb on - strand, within ABID97_RS20960 at 4334.441 kb on - strand, within ABID97_RS20960 at 4334.683 kb on + strand at 4334.828 kb on + strand at 4334.828 kb on + strand at 4334.829 kb on - strand at 4334.954 kb on + strand at 4334.967 kb on - strand at 4335.530 kb on + strand, within ABID97_RS20965 at 4335.608 kb on + strand, within ABID97_RS20965 at 4335.609 kb on - strand, within ABID97_RS20965 at 4335.609 kb on - strand, within ABID97_RS20965 at 4335.653 kb on + strand, within ABID97_RS20965 at 4335.653 kb on + strand, within ABID97_RS20965 at 4335.654 kb on - strand, within ABID97_RS20965 at 4335.654 kb on - strand, within ABID97_RS20965 at 4335.734 kb on + strand, within ABID97_RS20965 at 4335.734 kb on + strand, within ABID97_RS20965 at 4335.734 kb on + strand, within ABID97_RS20965 at 4335.735 kb on - strand, within ABID97_RS20965 at 4335.752 kb on + strand, within ABID97_RS20965 at 4335.752 kb on + strand, within ABID97_RS20965 at 4335.753 kb on - strand, within ABID97_RS20965 at 4335.753 kb on - strand, within ABID97_RS20965 at 4335.753 kb on - strand, within ABID97_RS20965 at 4335.965 kb on + strand, within ABID97_RS20965 at 4336.001 kb on + strand, within ABID97_RS20965 at 4336.001 kb on + strand, within ABID97_RS20965 at 4336.001 kb on + strand, within ABID97_RS20965 at 4336.001 kb on + strand, within ABID97_RS20965 at 4336.001 kb on + strand, within ABID97_RS20965 at 4336.455 kb on + strand at 4336.456 kb on - strand at 4336.461 kb on + strand at 4336.461 kb on + strand at 4336.494 kb on - strand at 4336.649 kb on + strand, within ABID97_RS20970 at 4336.649 kb on + strand, within ABID97_RS20970 at 4336.650 kb on - strand, within ABID97_RS20970 at 4337.043 kb on + strand, within ABID97_RS20975 at 4337.043 kb on + strand, within ABID97_RS20975 at 4337.044 kb on - strand, within ABID97_RS20975 at 4337.209 kb on - strand, within ABID97_RS20975
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,334,350 + -0.1 4,334,351 - +0.8 4,334,441 - ABID97_RS20960 0.32 -0.4 4,334,441 - ABID97_RS20960 0.32 +0.2 4,334,683 + -0.0 4,334,828 + +0.3 4,334,828 + -0.0 4,334,829 - -0.5 4,334,954 + +0.0 4,334,967 - -0.2 4,335,530 + ABID97_RS20965 0.41 -0.4 4,335,608 + ABID97_RS20965 0.46 -0.7 4,335,609 - ABID97_RS20965 0.46 -0.4 4,335,609 - ABID97_RS20965 0.46 -0.2 4,335,653 + ABID97_RS20965 0.48 -1.4 4,335,653 + ABID97_RS20965 0.48 -0.8 4,335,654 - ABID97_RS20965 0.48 -1.0 4,335,654 - ABID97_RS20965 0.48 +0.1 4,335,734 + ABID97_RS20965 0.54 -0.4 4,335,734 + ABID97_RS20965 0.54 -0.7 4,335,734 + ABID97_RS20965 0.54 -0.4 4,335,735 - ABID97_RS20965 0.54 -1.5 4,335,752 + ABID97_RS20965 0.55 -0.6 4,335,752 + ABID97_RS20965 0.55 +1.0 4,335,753 - ABID97_RS20965 0.55 +1.1 4,335,753 - ABID97_RS20965 0.55 -2.1 4,335,753 - ABID97_RS20965 0.55 -0.7 4,335,965 + ABID97_RS20965 0.68 -0.4 4,336,001 + ABID97_RS20965 0.71 -1.6 4,336,001 + ABID97_RS20965 0.71 -0.7 4,336,001 + ABID97_RS20965 0.71 -2.0 4,336,001 + ABID97_RS20965 0.71 -1.3 4,336,001 + ABID97_RS20965 0.71 -0.7 4,336,455 + +0.4 4,336,456 - -0.1 4,336,461 + -0.4 4,336,461 + +0.2 4,336,494 - +0.6 4,336,649 + ABID97_RS20970 0.13 +0.3 4,336,649 + ABID97_RS20970 0.13 -0.0 4,336,650 - ABID97_RS20970 0.13 +1.6 4,337,043 + ABID97_RS20975 0.11 +0.6 4,337,043 + ABID97_RS20975 0.11 -0.3 4,337,044 - ABID97_RS20975 0.12 -0.7 4,337,209 - ABID97_RS20975 0.36 +0.3
Or see this region's nucleotide sequence