Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20390 and ABID97_RS20395 are separated by 30 nucleotides ABID97_RS20395 and ABID97_RS20400 are separated by 38 nucleotides
ABID97_RS20390: ABID97_RS20390 - DHA2 family efflux MFS transporter permease subunit, at 4,208,723 to 4,210,285
_RS20390
ABID97_RS20395: ABID97_RS20395 - efflux RND transporter periplasmic adaptor subunit, at 4,210,316 to 4,211,653
_RS20395
ABID97_RS20400: ABID97_RS20400 - efflux transporter outer membrane subunit, at 4,211,692 to 4,213,170
_RS20400
Position (kb) 4210
4211
4212 Strain fitness (log2 ratio) -1
0
1
2 at 4209.424 kb on - strand, within ABID97_RS20390 at 4209.751 kb on - strand, within ABID97_RS20390 at 4209.873 kb on + strand, within ABID97_RS20390 at 4210.755 kb on + strand, within ABID97_RS20395 at 4210.918 kb on - strand, within ABID97_RS20395 at 4211.278 kb on - strand, within ABID97_RS20395 at 4211.467 kb on - strand, within ABID97_RS20395 at 4211.487 kb on + strand, within ABID97_RS20395 at 4211.488 kb on - strand, within ABID97_RS20395 at 4211.864 kb on + strand, within ABID97_RS20400 at 4211.865 kb on - strand, within ABID97_RS20400 at 4211.865 kb on - strand, within ABID97_RS20400 at 4211.906 kb on + strand, within ABID97_RS20400 at 4211.907 kb on - strand, within ABID97_RS20400 at 4212.207 kb on - strand, within ABID97_RS20400 at 4212.207 kb on - strand, within ABID97_RS20400 at 4212.207 kb on - strand, within ABID97_RS20400 at 4212.207 kb on - strand, within ABID97_RS20400 at 4212.603 kb on - strand, within ABID97_RS20400
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,209,424 - ABID97_RS20390 0.45 -0.0 4,209,751 - ABID97_RS20390 0.66 +0.4 4,209,873 + ABID97_RS20390 0.74 +0.5 4,210,755 + ABID97_RS20395 0.33 +2.0 4,210,918 - ABID97_RS20395 0.45 +0.0 4,211,278 - ABID97_RS20395 0.72 +0.6 4,211,467 - ABID97_RS20395 0.86 -0.0 4,211,487 + ABID97_RS20395 0.88 +0.2 4,211,488 - ABID97_RS20395 0.88 -0.0 4,211,864 + ABID97_RS20400 0.12 -0.5 4,211,865 - ABID97_RS20400 0.12 +0.6 4,211,865 - ABID97_RS20400 0.12 +0.1 4,211,906 + ABID97_RS20400 0.14 +0.3 4,211,907 - ABID97_RS20400 0.15 +0.0 4,212,207 - ABID97_RS20400 0.35 -0.5 4,212,207 - ABID97_RS20400 0.35 -0.3 4,212,207 - ABID97_RS20400 0.35 -0.8 4,212,207 - ABID97_RS20400 0.35 -0.4 4,212,603 - ABID97_RS20400 0.62 +0.1
Or see this region's nucleotide sequence