Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14975

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14965 and ABID97_RS14970 are separated by 28 nucleotidesABID97_RS14970 and ABID97_RS14975 are separated by 29 nucleotidesABID97_RS14975 and ABID97_RS14980 are separated by 430 nucleotidesABID97_RS14980 and ABID97_RS14985 are separated by 16 nucleotides ABID97_RS14965: ABID97_RS14965 - DegQ family serine endoprotease, at 3,110,033 to 3,111,502 _RS14965 ABID97_RS14970: ABID97_RS14970 - hypothetical protein, at 3,111,531 to 3,111,833 _RS14970 ABID97_RS14975: ABID97_RS14975 - hypothetical protein, at 3,111,863 to 3,112,078 _RS14975 ABID97_RS14980: ABID97_RS14980 - hypothetical protein, at 3,112,509 to 3,112,835 _RS14980 ABID97_RS14985: ABID97_RS14985 - hypothetical protein, at 3,112,852 to 3,113,064 _RS14985 Position (kb) 3111 3112 3113Strain fitness (log2 ratio) -1 0 1at 3111.864 kb on + strandat 3111.865 kb on - strandat 3111.949 kb on - strand, within ABID97_RS14975at 3111.949 kb on - strand, within ABID97_RS14975at 3111.996 kb on + strand, within ABID97_RS14975at 3112.091 kb on + strandat 3112.091 kb on + strandat 3112.185 kb on + strandat 3112.516 kb on + strandat 3112.516 kb on + strandat 3112.517 kb on - strandat 3112.517 kb on - strandat 3112.576 kb on + strand, within ABID97_RS14980at 3112.577 kb on - strand, within ABID97_RS14980at 3112.720 kb on + strand, within ABID97_RS14980at 3112.754 kb on - strand, within ABID97_RS14980at 3112.994 kb on - strand, within ABID97_RS14985at 3112.994 kb on - strand, within ABID97_RS14985at 3113.057 kb on + strandat 3113.057 kb on + strandat 3113.057 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,111,864 + -0.5
3,111,865 - -0.2
3,111,949 - ABID97_RS14975 0.40 -1.1
3,111,949 - ABID97_RS14975 0.40 -0.6
3,111,996 + ABID97_RS14975 0.62 -0.4
3,112,091 + -1.4
3,112,091 + -0.8
3,112,185 + +0.3
3,112,516 + -0.4
3,112,516 + -0.4
3,112,517 - +0.1
3,112,517 - +0.6
3,112,576 + ABID97_RS14980 0.20 -0.4
3,112,577 - ABID97_RS14980 0.21 -0.4
3,112,720 + ABID97_RS14980 0.65 +0.0
3,112,754 - ABID97_RS14980 0.75 +1.5
3,112,994 - ABID97_RS14985 0.67 +0.1
3,112,994 - ABID97_RS14985 0.67 +1.4
3,113,057 + -0.0
3,113,057 + +0.9
3,113,057 + +0.1

Or see this region's nucleotide sequence