Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01940

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01935 and ABID97_RS01940 are separated by 3 nucleotidesABID97_RS01940 and ABID97_RS01945 are separated by 20 nucleotidesABID97_RS01945 and ABID97_RS01950 overlap by 8 nucleotides ABID97_RS01935: ABID97_RS01935 - 3-oxo-tetronate kinase, at 382,221 to 383,492 _RS01935 ABID97_RS01940: ABID97_RS01940 - D-erythronate dehydrogenase, at 383,496 to 384,512 _RS01940 ABID97_RS01945: ABID97_RS01945 - L-threonate dehydrogenase, at 384,533 to 385,477 _RS01945 ABID97_RS01950: ABID97_RS01950 - MFS transporter, at 385,470 to 386,756 _RS01950 Position (kb) 383 384 385Strain fitness (log2 ratio) -1 0 1at 382.558 kb on + strand, within ABID97_RS01935at 382.559 kb on - strand, within ABID97_RS01935at 383.104 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.248 kb on + strand, within ABID97_RS01935at 383.249 kb on - strand, within ABID97_RS01935at 383.249 kb on - strand, within ABID97_RS01935at 384.046 kb on + strand, within ABID97_RS01940at 384.047 kb on - strand, within ABID97_RS01940at 384.047 kb on - strand, within ABID97_RS01940at 384.282 kb on - strand, within ABID97_RS01940at 384.819 kb on + strand, within ABID97_RS01945at 384.819 kb on + strand, within ABID97_RS01945at 384.820 kb on - strand, within ABID97_RS01945at 384.820 kb on - strand, within ABID97_RS01945at 384.820 kb on - strand, within ABID97_RS01945at 385.084 kb on - strand, within ABID97_RS01945at 385.438 kb on + strandat 385.439 kb on - strandat 385.439 kb on - strandat 385.439 kb on - strandat 385.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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382,558 + ABID97_RS01935 0.26 -0.4
382,559 - ABID97_RS01935 0.27 -0.7
383,104 + ABID97_RS01935 0.69 +0.0
383,248 + ABID97_RS01935 0.81 -0.1
383,248 + ABID97_RS01935 0.81 -0.2
383,248 + ABID97_RS01935 0.81 +0.6
383,248 + ABID97_RS01935 0.81 +0.1
383,248 + ABID97_RS01935 0.81 -0.2
383,248 + ABID97_RS01935 0.81 -0.1
383,248 + ABID97_RS01935 0.81 -0.1
383,249 - ABID97_RS01935 0.81 -1.0
383,249 - ABID97_RS01935 0.81 -0.9
384,046 + ABID97_RS01940 0.54 +0.0
384,047 - ABID97_RS01940 0.54 -0.2
384,047 - ABID97_RS01940 0.54 -0.4
384,282 - ABID97_RS01940 0.77 -0.4
384,819 + ABID97_RS01945 0.30 -0.6
384,819 + ABID97_RS01945 0.30 +0.8
384,820 - ABID97_RS01945 0.30 +0.0
384,820 - ABID97_RS01945 0.30 -0.0
384,820 - ABID97_RS01945 0.30 +1.3
385,084 - ABID97_RS01945 0.58 +0.3
385,438 + +0.6
385,439 - -0.2
385,439 - -0.0
385,439 - +0.5
385,439 - -1.3

Or see this region's nucleotide sequence