Strain Fitness in Escherichia coli BW25113 around b3725

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoU and pstB are separated by 14 nucleotidespstB and pstA are separated by 182 nucleotides b3724: phoU - negative regulator of PhoR/PhoB two-component regulator (NCBI), at 3,904,876 to 3,905,601 phoU b3725: pstB - phosphate transporter subunit (NCBI), at 3,905,616 to 3,906,389 pstB b3726: pstA - phosphate transporter subunit (NCBI), at 3,906,572 to 3,907,462 pstA Position (kb) 3905 3906 3907Strain fitness (log2 ratio) -3 -2 -1 0 1at 3904.668 kb on + strandat 3904.668 kb on + strandat 3904.798 kb on - strandat 3904.861 kb on - strandat 3904.868 kb on - strandat 3904.896 kb on - strandat 3904.930 kb on - strandat 3905.604 kb on - strandat 3905.604 kb on - strandat 3905.604 kb on - strandat 3905.608 kb on + strandat 3905.665 kb on - strandat 3905.700 kb on + strand, within pstBat 3906.128 kb on + strand, within pstBat 3906.136 kb on - strand, within pstBat 3906.381 kb on - strandat 3906.387 kb on - strandat 3906.468 kb on - strandat 3906.483 kb on + strandat 3906.493 kb on - strandat 3906.493 kb on - strandat 3906.524 kb on - strandat 3906.526 kb on + strandat 3906.538 kb on + strandat 3906.538 kb on + strandat 3906.538 kb on + strandat 3906.538 kb on + strandat 3906.546 kb on - strandat 3906.546 kb on - strandat 3906.546 kb on - strandat 3906.546 kb on - strandat 3906.546 kb on - strandat 3906.574 kb on - strandat 3906.574 kb on - strandat 3906.579 kb on + strandat 3906.587 kb on - strandat 3906.587 kb on - strandat 3906.614 kb on + strandat 3906.642 kb on - strandat 3906.642 kb on - strandat 3906.644 kb on - strandat 3906.779 kb on - strand, within pstAat 3906.835 kb on - strand, within pstAat 3906.836 kb on - strand, within pstAat 3906.888 kb on - strand, within pstAat 3906.905 kb on - strand, within pstAat 3906.918 kb on + strand, within pstAat 3906.928 kb on - strand, within pstAat 3906.951 kb on - strand, within pstAat 3906.992 kb on - strand, within pstAat 3907.077 kb on - strand, within pstAat 3907.084 kb on - strand, within pstAat 3907.084 kb on - strand, within pstAat 3907.089 kb on - strand, within pstAat 3907.199 kb on - strand, within pstAat 3907.218 kb on - strand, within pstAat 3907.218 kb on - strand, within pstAat 3907.236 kb on - strand, within pstAat 3907.236 kb on - strand, within pstAat 3907.337 kb on - strand, within pstA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,904,668 + -0.8
3,904,668 + +1.6
3,904,798 - -0.1
3,904,861 - -2.1
3,904,868 - -0.7
3,904,896 - +0.1
3,904,930 - -2.3
3,905,604 - -0.6
3,905,604 - +0.5
3,905,604 - +0.5
3,905,608 + +0.4
3,905,665 - -0.9
3,905,700 + pstB b3725 0.11 -1.9
3,906,128 + pstB b3725 0.66 -1.1
3,906,136 - pstB b3725 0.67 -0.9
3,906,381 - +0.5
3,906,387 - -0.8
3,906,468 - -0.4
3,906,483 + -0.8
3,906,493 - -0.0
3,906,493 - +0.7
3,906,524 - +0.1
3,906,526 + -0.5
3,906,538 + -2.0
3,906,538 + +0.1
3,906,538 + -0.4
3,906,538 + -1.4
3,906,546 - +0.6
3,906,546 - +0.3
3,906,546 - -0.2
3,906,546 - -0.2
3,906,546 - +0.7
3,906,574 - +0.2
3,906,574 - -0.5
3,906,579 + -0.4
3,906,587 - -0.4
3,906,587 - +1.1
3,906,614 + -1.6
3,906,642 - +0.9
3,906,642 - +1.3
3,906,644 - -0.1
3,906,779 - pstA b3726 0.23 -2.3
3,906,835 - pstA b3726 0.30 -2.0
3,906,836 - pstA b3726 0.30 -1.2
3,906,888 - pstA b3726 0.35 -0.9
3,906,905 - pstA b3726 0.37 -2.6
3,906,918 + pstA b3726 0.39 -0.9
3,906,928 - pstA b3726 0.40 -0.5
3,906,951 - pstA b3726 0.43 -2.2
3,906,992 - pstA b3726 0.47 -3.2
3,907,077 - pstA b3726 0.57 -0.6
3,907,084 - pstA b3726 0.57 -1.3
3,907,084 - pstA b3726 0.57 -1.6
3,907,089 - pstA b3726 0.58 -2.3
3,907,199 - pstA b3726 0.70 -0.3
3,907,218 - pstA b3726 0.73 -1.2
3,907,218 - pstA b3726 0.73 -0.9
3,907,236 - pstA b3726 0.75 -2.4
3,907,236 - pstA b3726 0.75 -0.3
3,907,337 - pstA b3726 0.86 -1.0

Or see this region's nucleotide sequence