Strain Fitness in Escherichia coli BW25113 around b2830

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntptsP and nudH are separated by 12 nucleotidesnudH and mutH are separated by 684 nucleotides b2829: ptsP - fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI), at 2,964,210 to 2,966,456 ptsP b2830: nudH - dinucleoside polyphosphate hydrolase (NCBI), at 2,966,469 to 2,966,999 nudH b2831: mutH - DNA mismatch repair protein (NCBI), at 2,967,684 to 2,968,373 mutH Position (kb) 2966 2967Strain fitness (log2 ratio) -2 -1 0 1 2at 2965.575 kb on - strand, within ptsPat 2965.575 kb on - strand, within ptsPat 2965.860 kb on + strand, within ptsPat 2965.876 kb on + strand, within ptsPat 2965.910 kb on - strand, within ptsPat 2965.937 kb on - strand, within ptsPat 2965.937 kb on - strand, within ptsPat 2965.968 kb on + strand, within ptsPat 2965.971 kb on + strand, within ptsPat 2966.002 kb on + strand, within ptsPat 2966.055 kb on - strand, within ptsPat 2966.063 kb on + strandat 2966.063 kb on + strand, within ptsPat 2966.064 kb on + strand, within ptsPat 2966.089 kb on - strand, within ptsPat 2966.089 kb on - strand, within ptsPat 2966.167 kb on - strand, within ptsPat 2966.258 kb on + strandat 2966.346 kb on + strandat 2966.346 kb on + strandat 2966.346 kb on - strandat 2966.400 kb on + strandat 2966.459 kb on - strandat 2966.459 kb on - strandat 2966.465 kb on + strandat 2966.467 kb on + strandat 2966.467 kb on + strandat 2966.474 kb on - strandat 2966.484 kb on - strandat 2966.484 kb on - strandat 2966.532 kb on + strand, within nudHat 2966.565 kb on + strand, within nudHat 2966.645 kb on + strand, within nudHat 2966.645 kb on + strand, within nudHat 2966.722 kb on + strand, within nudHat 2967.071 kb on + strandat 2967.078 kb on + strandat 2967.078 kb on + strandat 2967.640 kb on - strandat 2967.694 kb on - strandat 2967.728 kb on + strandat 2967.768 kb on - strand, within mutHat 2967.768 kb on - strand, within mutHat 2967.994 kb on - strand, within mutH

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,965,575 - ptsP b2829 0.61 +1.0
2,965,575 - ptsP b2829 0.61 +1.1
2,965,860 + ptsP b2829 0.73 +1.8
2,965,876 + ptsP b2829 0.74 +1.9
2,965,910 - ptsP b2829 0.76 +1.4
2,965,937 - ptsP b2829 0.77 +1.8
2,965,937 - ptsP b2829 0.77 +2.5
2,965,968 + ptsP b2829 0.78 +1.1
2,965,971 + ptsP b2829 0.78 +1.1
2,966,002 + ptsP b2829 0.80 +1.5
2,966,055 - ptsP b2829 0.82 -1.3
2,966,063 + +0.0
2,966,063 + ptsP b2829 0.82 +0.3
2,966,064 + ptsP b2829 0.83 +0.8
2,966,089 - ptsP b2829 0.84 +1.0
2,966,089 - ptsP b2829 0.84 +0.6
2,966,167 - ptsP b2829 0.87 +1.9
2,966,258 + +2.1
2,966,346 + +1.6
2,966,346 + +2.6
2,966,346 - +0.5
2,966,400 + +1.4
2,966,459 - -1.0
2,966,459 - +1.1
2,966,465 + +1.3
2,966,467 + +1.8
2,966,467 + +1.3
2,966,474 - +0.5
2,966,484 - -0.5
2,966,484 - -1.7
2,966,532 + nudH b2830 0.12 -0.4
2,966,565 + nudH b2830 0.18 -1.6
2,966,645 + nudH b2830 0.33 -2.6
2,966,645 + nudH b2830 0.33 -1.0
2,966,722 + nudH b2830 0.48 -1.2
2,967,071 + +0.8
2,967,078 + -0.1
2,967,078 + +0.0
2,967,640 - +0.1
2,967,694 - +0.0
2,967,728 + -0.6
2,967,768 - mutH b2831 0.12 -0.7
2,967,768 - mutH b2831 0.12 -1.6
2,967,994 - mutH b2831 0.45 -0.8

Or see this region's nucleotide sequence