Strain Fitness in Escherichia coli BW25113 around b2424

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcysA and cysW overlap by 11 nucleotidescysW and cysU overlap by 1 nucleotidescysU and cysP overlap by 1 nucleotides b2422: cysA - sulfate/thiosulfate transporter subunit (NCBI), at 2,537,739 to 2,538,836 cysA b2423: cysW - sulfate/thiosulfate transporter subunit (NCBI), at 2,538,826 to 2,539,701 cysW b2424: cysU - sulfate/thiosulfate transporter subunit (NCBI), at 2,539,701 to 2,540,534 cysU b2425: cysP - thiosulfate transporter subunit (NCBI), at 2,540,534 to 2,541,550 cysP Position (kb) 2539 2540 2541Strain fitness (log2 ratio) -3 -2 -1 0 1at 2538.824 kb on + strandat 2538.824 kb on + strandat 2538.846 kb on - strandat 2538.846 kb on - strandat 2538.952 kb on + strand, within cysWat 2538.952 kb on + strand, within cysWat 2538.959 kb on + strand, within cysWat 2538.961 kb on + strand, within cysWat 2538.986 kb on + strand, within cysWat 2539.072 kb on + strand, within cysWat 2539.173 kb on + strand, within cysWat 2539.173 kb on + strand, within cysWat 2539.240 kb on + strand, within cysWat 2539.249 kb on - strand, within cysWat 2539.249 kb on - strand, within cysWat 2539.456 kb on + strand, within cysWat 2539.468 kb on - strand, within cysWat 2539.468 kb on - strand, within cysWat 2539.468 kb on - strand, within cysWat 2539.694 kb on - strandat 2540.062 kb on + strand, within cysUat 2540.110 kb on - strand, within cysUat 2540.110 kb on - strand, within cysUat 2540.129 kb on + strand, within cysUat 2540.492 kb on + strandat 2540.535 kb on + strandat 2540.563 kb on - strandat 2540.677 kb on - strand, within cysPat 2540.677 kb on - strand, within cysPat 2540.695 kb on - strand, within cysPat 2540.752 kb on - strand, within cysPat 2540.816 kb on - strand, within cysPat 2540.858 kb on + strand, within cysPat 2540.872 kb on + strand, within cysPat 2541.064 kb on + strand, within cysPat 2541.066 kb on + strand, within cysPat 2541.077 kb on - strand, within cysPat 2541.159 kb on + strand, within cysPat 2541.181 kb on - strand, within cysPat 2541.194 kb on + strand, within cysPat 2541.229 kb on - strand, within cysPat 2541.421 kb on - strand, within cysP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
2,538,824 + -1.8
2,538,824 + -1.7
2,538,846 - -0.0
2,538,846 - +0.2
2,538,952 + cysW b2423 0.14 -0.8
2,538,952 + cysW b2423 0.14 -2.0
2,538,959 + cysW b2423 0.15 +0.3
2,538,961 + cysW b2423 0.15 -1.9
2,538,986 + cysW b2423 0.18 +0.2
2,539,072 + cysW b2423 0.28 -3.7
2,539,173 + cysW b2423 0.40 -1.1
2,539,173 + cysW b2423 0.40 -1.8
2,539,240 + cysW b2423 0.47 -1.0
2,539,249 - cysW b2423 0.48 +0.2
2,539,249 - cysW b2423 0.48 -0.6
2,539,456 + cysW b2423 0.72 -0.8
2,539,468 - cysW b2423 0.73 -0.8
2,539,468 - cysW b2423 0.73 +1.0
2,539,468 - cysW b2423 0.73 -1.7
2,539,694 - -1.4
2,540,062 + cysU b2424 0.43 -1.5
2,540,110 - cysU b2424 0.49 -1.4
2,540,110 - cysU b2424 0.49 -3.0
2,540,129 + cysU b2424 0.51 -2.6
2,540,492 + -2.7
2,540,535 + -1.7
2,540,563 - -1.4
2,540,677 - cysP b2425 0.14 +0.5
2,540,677 - cysP b2425 0.14 +0.1
2,540,695 - cysP b2425 0.16 -0.6
2,540,752 - cysP b2425 0.21 -0.8
2,540,816 - cysP b2425 0.28 +0.2
2,540,858 + cysP b2425 0.32 -0.8
2,540,872 + cysP b2425 0.33 -1.2
2,541,064 + cysP b2425 0.52 -1.8
2,541,066 + cysP b2425 0.52 -2.8
2,541,077 - cysP b2425 0.53 -0.1
2,541,159 + cysP b2425 0.61 -1.5
2,541,181 - cysP b2425 0.64 -0.4
2,541,194 + cysP b2425 0.65 -1.7
2,541,229 - cysP b2425 0.68 -1.5
2,541,421 - cysP b2425 0.87 -0.5

Or see this region's nucleotide sequence