Strain Fitness in Escherichia coli BW25113 around b2320

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntusg and pdxB are separated by 65 nucleotidespdxB and flk are separated by 98 nucleotides b2319: usg - hypothetical protein (NCBI), at 2,433,658 to 2,434,671 usg b2320: pdxB - erythronate-4-phosphate dehydrogenase (NCBI), at 2,434,737 to 2,435,873 pdxB b2321: flk - predicted flagella assembly protein (NCBI), at 2,435,972 to 2,436,967 flk Position (kb) 2434 2435 2436Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2433.753 kb on - strandat 2433.846 kb on + strand, within usgat 2433.853 kb on - strand, within usgat 2433.853 kb on - strand, within usgat 2433.910 kb on + strand, within usgat 2433.943 kb on + strand, within usgat 2433.952 kb on - strand, within usgat 2433.952 kb on - strand, within usgat 2434.057 kb on + strand, within usgat 2434.167 kb on - strand, within usgat 2434.287 kb on - strand, within usgat 2434.287 kb on - strand, within usgat 2434.339 kb on + strand, within usgat 2434.360 kb on + strand, within usgat 2434.626 kb on - strandat 2434.647 kb on + strandat 2434.647 kb on + strandat 2434.690 kb on - strandat 2434.711 kb on + strandat 2434.761 kb on + strandat 2434.787 kb on + strandat 2434.881 kb on - strand, within pdxBat 2434.881 kb on - strand, within pdxBat 2434.932 kb on + strand, within pdxBat 2434.932 kb on + strand, within pdxBat 2434.999 kb on - strand, within pdxBat 2435.038 kb on - strand, within pdxBat 2435.105 kb on - strandat 2435.110 kb on + strand, within pdxBat 2435.110 kb on + strand, within pdxBat 2435.230 kb on + strand, within pdxBat 2435.230 kb on + strand, within pdxBat 2435.246 kb on + strand, within pdxBat 2435.285 kb on + strand, within pdxBat 2435.324 kb on + strand, within pdxBat 2435.324 kb on + strand, within pdxBat 2435.343 kb on - strand, within pdxBat 2435.511 kb on + strand, within pdxBat 2435.796 kb on - strandat 2435.796 kb on - strandat 2435.801 kb on - strandat 2435.838 kb on + strandat 2435.838 kb on + strandat 2435.913 kb on - strandat 2435.939 kb on - strandat 2435.982 kb on - strandat 2436.015 kb on - strandat 2436.067 kb on + strandat 2436.124 kb on - strand, within flkat 2436.134 kb on - strand, within flkat 2436.134 kb on - strand, within flkat 2436.134 kb on - strand, within flkat 2436.164 kb on - strand, within flkat 2436.211 kb on + strand, within flkat 2436.258 kb on - strand, within flkat 2436.258 kb on - strand, within flkat 2436.260 kb on + strand, within flkat 2436.352 kb on - strand, within flkat 2436.352 kb on - strand, within flkat 2436.359 kb on + strand, within flkat 2436.359 kb on + strand, within flkat 2436.629 kb on - strand, within flkat 2436.774 kb on + strand, within flkat 2436.813 kb on - strand, within flkat 2436.813 kb on - strand, within flkat 2436.828 kb on + strand, within flk

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,433,753 - -0.4
2,433,846 + usg b2319 0.19 -2.3
2,433,853 - usg b2319 0.19 -0.1
2,433,853 - usg b2319 0.19 +0.9
2,433,910 + usg b2319 0.25 -0.3
2,433,943 + usg b2319 0.28 -0.1
2,433,952 - usg b2319 0.29 +0.5
2,433,952 - usg b2319 0.29 -0.2
2,434,057 + usg b2319 0.39 -0.6
2,434,167 - usg b2319 0.50 +1.0
2,434,287 - usg b2319 0.62 +0.2
2,434,287 - usg b2319 0.62 -0.3
2,434,339 + usg b2319 0.67 +0.2
2,434,360 + usg b2319 0.69 +0.3
2,434,626 - -0.2
2,434,647 + +0.3
2,434,647 + -0.1
2,434,690 - +0.2
2,434,711 + -0.6
2,434,761 + -2.6
2,434,787 + -1.1
2,434,881 - pdxB b2320 0.13 -2.9
2,434,881 - pdxB b2320 0.13 -4.5
2,434,932 + pdxB b2320 0.17 -2.2
2,434,932 + pdxB b2320 0.17 +0.1
2,434,999 - pdxB b2320 0.23 -2.8
2,435,038 - pdxB b2320 0.26 -0.7
2,435,105 - -0.8
2,435,110 + pdxB b2320 0.33 -2.6
2,435,110 + pdxB b2320 0.33 -1.9
2,435,230 + pdxB b2320 0.43 -2.6
2,435,230 + pdxB b2320 0.43 -2.6
2,435,246 + pdxB b2320 0.45 -1.8
2,435,285 + pdxB b2320 0.48 -1.8
2,435,324 + pdxB b2320 0.52 -3.0
2,435,324 + pdxB b2320 0.52 -1.3
2,435,343 - pdxB b2320 0.53 -2.2
2,435,511 + pdxB b2320 0.68 -1.1
2,435,796 - -1.6
2,435,796 - -2.5
2,435,801 - -2.7
2,435,838 + -2.1
2,435,838 + -2.6
2,435,913 - +0.4
2,435,939 - -0.6
2,435,982 - -0.1
2,436,015 - -0.2
2,436,067 + -0.4
2,436,124 - flk b2321 0.15 +1.4
2,436,134 - flk b2321 0.16 -0.3
2,436,134 - flk b2321 0.16 +0.1
2,436,134 - flk b2321 0.16 -0.1
2,436,164 - flk b2321 0.19 +2.3
2,436,211 + flk b2321 0.24 -0.1
2,436,258 - flk b2321 0.29 +0.1
2,436,258 - flk b2321 0.29 -0.2
2,436,260 + flk b2321 0.29 -0.8
2,436,352 - flk b2321 0.38 -0.1
2,436,352 - flk b2321 0.38 -0.1
2,436,359 + flk b2321 0.39 -0.4
2,436,359 + flk b2321 0.39 -0.2
2,436,629 - flk b2321 0.66 +0.7
2,436,774 + flk b2321 0.81 -0.3
2,436,813 - flk b2321 0.84 -1.1
2,436,813 - flk b2321 0.84 -0.9
2,436,828 + flk b2321 0.86 +0.1

Or see this region's nucleotide sequence