Strain Fitness in Escherichia coli BW25113 around b1292

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsapF and sapD are separated by 1 nucleotidessapD and sapC overlap by 1 nucleotidessapC and sapB overlap by 14 nucleotidessapB and sapA overlap by 4 nucleotides b1290: sapF - predicted antimicrobial peptide transporter subunit (NCBI), at 1,349,852 to 1,350,658 sapF b1291: sapD - predicted antimicrobial peptide transporter subunit (NCBI), at 1,350,660 to 1,351,652 sapD b1292: sapC - predicted antimicrobial peptide transporter subunit (NCBI), at 1,351,652 to 1,352,542 sapC b1293: sapB - predicted antimicrobial peptide transporter subunit (NCBI), at 1,352,529 to 1,353,494 sapB b1294: sapA - predicted antimicrobial peptide transporter subunit (NCBI), at 1,353,491 to 1,355,134 sapA Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1at 1350.656 kb on - strandat 1350.749 kb on + strandat 1350.855 kb on + strand, within sapDat 1350.861 kb on + strand, within sapDat 1350.997 kb on - strand, within sapDat 1351.021 kb on - strand, within sapDat 1351.342 kb on - strand, within sapDat 1351.739 kb on - strandat 1352.074 kb on - strand, within sapCat 1352.113 kb on + strand, within sapCat 1352.173 kb on + strand, within sapCat 1352.173 kb on + strand, within sapCat 1352.254 kb on + strand, within sapCat 1352.290 kb on - strand, within sapCat 1352.351 kb on - strand, within sapCat 1352.438 kb on + strand, within sapCat 1352.770 kb on - strand, within sapBat 1352.770 kb on - strand, within sapBat 1352.790 kb on + strand, within sapBat 1353.131 kb on + strand, within sapBat 1353.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,350,656 - -0.3
1,350,749 + -1.5
1,350,855 + sapD b1291 0.20 -1.5
1,350,861 + sapD b1291 0.20 -2.4
1,350,997 - sapD b1291 0.34 -1.9
1,351,021 - sapD b1291 0.36 -2.0
1,351,342 - sapD b1291 0.69 -1.5
1,351,739 - -0.7
1,352,074 - sapC b1292 0.47 -1.2
1,352,113 + sapC b1292 0.52 -0.9
1,352,173 + sapC b1292 0.58 -2.5
1,352,173 + sapC b1292 0.58 -0.7
1,352,254 + sapC b1292 0.68 -1.0
1,352,290 - sapC b1292 0.72 -0.8
1,352,351 - sapC b1292 0.78 +1.3
1,352,438 + sapC b1292 0.88 -1.5
1,352,770 - sapB b1293 0.25 +0.2
1,352,770 - sapB b1293 0.25 +0.3
1,352,790 + sapB b1293 0.27 -2.4
1,353,131 + sapB b1293 0.62 -2.0
1,353,522 + +0.3

Or see this region's nucleotide sequence