Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ymfB and ymfC are separated by 9 nucleotides ymfC and icd are separated by 171 nucleotides icd and ymfD are separated by 493 nucleotides
b1134: ymfB - bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI), at 1,193,050 to 1,193,511
ymfB
b1135: ymfC - orf, hypothetical protein (VIMSS), at 1,193,521 to 1,194,174
ymfC
b1136: icd - isocitrate dehydrogenase (NCBI), at 1,194,346 to 1,195,596
icd
b1137: ymfD - e14 prophage; predicted SAM-dependent methyltransferase (NCBI), at 1,196,090 to 1,196,755
ymfD
Position (kb)
1194
1195
1196 Strain fitness (log2 ratio)
-1
0
1 at 1193.439 kb on - strand, within ymfB at 1193.469 kb on + strand at 1193.558 kb on - strand at 1193.669 kb on - strand, within ymfC at 1193.697 kb on - strand, within ymfC at 1193.774 kb on - strand, within ymfC at 1193.778 kb on + strand, within ymfC at 1193.780 kb on - strand, within ymfC at 1193.825 kb on + strand, within ymfC at 1193.886 kb on - strand, within ymfC at 1195.722 kb on - strand at 1195.722 kb on - strand at 1195.729 kb on + strand at 1195.735 kb on + strand at 1195.740 kb on + strand at 1195.740 kb on + strand at 1195.740 kb on + strand at 1195.741 kb on + strand at 1195.746 kb on - strand at 1195.749 kb on + strand at 1195.760 kb on + strand at 1195.807 kb on + strand at 1195.888 kb on + strand at 1195.894 kb on - strand at 1195.894 kb on - strand at 1195.894 kb on - strand at 1195.895 kb on - strand at 1195.895 kb on - strand at 1195.896 kb on - strand at 1195.896 kb on - strand at 1195.896 kb on - strand at 1195.932 kb on + strand at 1195.932 kb on + strand at 1195.938 kb on - strand at 1195.941 kb on - strand at 1195.944 kb on + strand at 1195.944 kb on + strand at 1195.954 kb on + strand at 1195.957 kb on - strand at 1195.961 kb on - strand at 1195.963 kb on - strand at 1195.972 kb on - strand at 1195.982 kb on - strand at 1195.985 kb on + strand at 1196.004 kb on - strand at 1196.045 kb on + strand at 1196.045 kb on + strand at 1196.054 kb on + strand at 1196.105 kb on - strand at 1196.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,193,439 - ymfB b1134 0.84 -0.2 1,193,469 + +0.1 1,193,558 - +0.6 1,193,669 - ymfC b1135 0.23 -0.1 1,193,697 - ymfC b1135 0.27 +0.4 1,193,774 - ymfC b1135 0.39 -0.8 1,193,778 + ymfC b1135 0.39 +0.2 1,193,780 - ymfC b1135 0.40 +1.2 1,193,825 + ymfC b1135 0.46 -0.1 1,193,886 - ymfC b1135 0.56 +0.5 1,195,722 - -0.2 1,195,722 - -0.4 1,195,729 + -0.7 1,195,735 + +0.4 1,195,740 + +0.5 1,195,740 + +0.3 1,195,740 + -1.2 1,195,741 + +0.2 1,195,746 - +0.3 1,195,749 + +0.1 1,195,760 + -0.0 1,195,807 + -1.4 1,195,888 + -1.0 1,195,894 - +0.1 1,195,894 - -0.9 1,195,894 - -0.1 1,195,895 - +0.0 1,195,895 - -0.8 1,195,896 - +0.2 1,195,896 - +0.1 1,195,896 - -0.3 1,195,932 + +0.3 1,195,932 + +0.8 1,195,938 - -0.1 1,195,941 - +0.1 1,195,944 + -0.0 1,195,944 + +0.1 1,195,954 + -0.1 1,195,957 - +0.1 1,195,961 - -0.2 1,195,963 - +0.4 1,195,972 - +0.5 1,195,982 - -0.3 1,195,985 + +0.3 1,196,004 - +0.8 1,196,045 + -0.0 1,196,045 + +0.2 1,196,054 + -0.4 1,196,105 - -0.3 1,196,127 - -0.5
Or see this region's nucleotide sequence