Strain Fitness in Escherichia coli BW25113 around b1136

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntymfB and ymfC are separated by 9 nucleotidesymfC and icd are separated by 171 nucleotidesicd and ymfD are separated by 493 nucleotides b1134: ymfB - bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI), at 1,193,050 to 1,193,511 ymfB b1135: ymfC - orf, hypothetical protein (VIMSS), at 1,193,521 to 1,194,174 ymfC b1136: icd - isocitrate dehydrogenase (NCBI), at 1,194,346 to 1,195,596 icd b1137: ymfD - e14 prophage; predicted SAM-dependent methyltransferase (NCBI), at 1,196,090 to 1,196,755 ymfD Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -1 0 1at 1193.439 kb on - strand, within ymfBat 1193.469 kb on + strandat 1193.558 kb on - strandat 1193.669 kb on - strand, within ymfCat 1193.697 kb on - strand, within ymfCat 1193.774 kb on - strand, within ymfCat 1193.778 kb on + strand, within ymfCat 1193.780 kb on - strand, within ymfCat 1193.825 kb on + strand, within ymfCat 1193.886 kb on - strand, within ymfCat 1195.722 kb on - strandat 1195.722 kb on - strandat 1195.729 kb on + strandat 1195.735 kb on + strandat 1195.740 kb on + strandat 1195.740 kb on + strandat 1195.740 kb on + strandat 1195.741 kb on + strandat 1195.746 kb on - strandat 1195.749 kb on + strandat 1195.760 kb on + strandat 1195.807 kb on + strandat 1195.888 kb on + strandat 1195.894 kb on - strandat 1195.894 kb on - strandat 1195.894 kb on - strandat 1195.895 kb on - strandat 1195.895 kb on - strandat 1195.896 kb on - strandat 1195.896 kb on - strandat 1195.896 kb on - strandat 1195.932 kb on + strandat 1195.932 kb on + strandat 1195.938 kb on - strandat 1195.941 kb on - strandat 1195.944 kb on + strandat 1195.944 kb on + strandat 1195.954 kb on + strandat 1195.957 kb on - strandat 1195.961 kb on - strandat 1195.963 kb on - strandat 1195.972 kb on - strandat 1195.982 kb on - strandat 1195.985 kb on + strandat 1196.004 kb on - strandat 1196.045 kb on + strandat 1196.045 kb on + strandat 1196.054 kb on + strandat 1196.105 kb on - strandat 1196.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,193,439 - ymfB b1134 0.84 -0.2
1,193,469 + +0.1
1,193,558 - +0.6
1,193,669 - ymfC b1135 0.23 -0.1
1,193,697 - ymfC b1135 0.27 +0.4
1,193,774 - ymfC b1135 0.39 -0.8
1,193,778 + ymfC b1135 0.39 +0.2
1,193,780 - ymfC b1135 0.40 +1.2
1,193,825 + ymfC b1135 0.46 -0.1
1,193,886 - ymfC b1135 0.56 +0.5
1,195,722 - -0.2
1,195,722 - -0.4
1,195,729 + -0.7
1,195,735 + +0.4
1,195,740 + +0.5
1,195,740 + +0.3
1,195,740 + -1.2
1,195,741 + +0.2
1,195,746 - +0.3
1,195,749 + +0.1
1,195,760 + -0.0
1,195,807 + -1.4
1,195,888 + -1.0
1,195,894 - +0.1
1,195,894 - -0.9
1,195,894 - -0.1
1,195,895 - +0.0
1,195,895 - -0.8
1,195,896 - +0.2
1,195,896 - +0.1
1,195,896 - -0.3
1,195,932 + +0.3
1,195,932 + +0.8
1,195,938 - -0.1
1,195,941 - +0.1
1,195,944 + -0.0
1,195,944 + +0.1
1,195,954 + -0.1
1,195,957 - +0.1
1,195,961 - -0.2
1,195,963 - +0.4
1,195,972 - +0.5
1,195,982 - -0.3
1,195,985 + +0.3
1,196,004 - +0.8
1,196,045 + -0.0
1,196,045 + +0.2
1,196,054 + -0.4
1,196,105 - -0.3
1,196,127 - -0.5

Or see this region's nucleotide sequence