Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt solA and yceP are separated by 114 nucleotides yceP and dinI are separated by 286 nucleotides dinI and pyrC are separated by 73 nucleotides pyrC and yceB are separated by 105 nucleotides yceB and grxB are separated by 133 nucleotides
b1059: solA - N-methyltryptophan oxidase, FAD-binding (NCBI), at 1,118,691 to 1,119,809
solA
b1060: yceP - orf, hypothetical protein (VIMSS), at 1,119,924 to 1,120,178
yceP
b1061: dinI - DNA damage-inducible protein I (NCBI), at 1,120,465 to 1,120,710
dinI
b1062: pyrC - dihydroorotase (NCBI), at 1,120,784 to 1,121,830
pyrC
b1063: yceB - predicted lipoprotein (NCBI), at 1,121,936 to 1,122,496
yceB
b1064: grxB - glutaredoxin 2 (Grx2) (NCBI), at 1,122,630 to 1,123,277
grxB
Position (kb)
1120
1121
1122 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1119.833 kb on - strand at 1119.838 kb on - strand at 1119.838 kb on - strand at 1119.865 kb on - strand at 1119.882 kb on + strand at 1119.882 kb on + strand at 1119.889 kb on + strand at 1119.891 kb on - strand at 1119.912 kb on + strand at 1119.921 kb on + strand at 1119.921 kb on - strand at 1119.925 kb on - strand at 1119.925 kb on - strand at 1119.929 kb on - strand at 1120.063 kb on + strand, within yceP at 1120.100 kb on + strand, within yceP at 1120.100 kb on + strand, within yceP at 1120.120 kb on + strand, within yceP at 1120.120 kb on + strand, within yceP at 1120.120 kb on + strand, within yceP at 1120.130 kb on - strand, within yceP at 1120.134 kb on + strand, within yceP at 1120.134 kb on + strand, within yceP at 1120.135 kb on - strand, within yceP at 1120.135 kb on - strand at 1120.136 kb on - strand, within yceP at 1120.136 kb on - strand, within yceP at 1120.140 kb on - strand, within yceP at 1120.143 kb on - strand, within yceP at 1120.143 kb on - strand, within yceP at 1120.158 kb on - strand at 1120.176 kb on + strand at 1120.176 kb on + strand at 1120.216 kb on - strand at 1120.269 kb on - strand at 1120.276 kb on - strand at 1120.346 kb on - strand at 1120.539 kb on - strand, within dinI at 1120.582 kb on + strand, within dinI at 1120.631 kb on - strand, within dinI at 1120.659 kb on - strand, within dinI at 1120.670 kb on - strand, within dinI at 1120.670 kb on - strand, within dinI at 1120.852 kb on - strand at 1120.868 kb on + strand at 1120.917 kb on + strand, within pyrC at 1120.985 kb on - strand, within pyrC at 1120.985 kb on - strand, within pyrC at 1121.019 kb on + strand, within pyrC at 1121.059 kb on + strand, within pyrC at 1121.073 kb on - strand, within pyrC at 1121.073 kb on - strand, within pyrC at 1121.123 kb on + strand, within pyrC at 1121.123 kb on + strand, within pyrC at 1121.174 kb on - strand, within pyrC at 1121.174 kb on - strand, within pyrC at 1121.195 kb on - strand, within pyrC at 1121.205 kb on - strand, within pyrC at 1121.205 kb on - strand, within pyrC at 1121.210 kb on + strand, within pyrC at 1121.427 kb on - strand, within pyrC at 1121.456 kb on + strand, within pyrC at 1121.495 kb on + strand, within pyrC at 1121.574 kb on - strand, within pyrC at 1121.574 kb on - strand, within pyrC at 1121.636 kb on + strand, within pyrC at 1121.641 kb on + strand, within pyrC at 1121.668 kb on + strand, within pyrC at 1121.668 kb on + strand, within pyrC at 1121.689 kb on + strand, within pyrC at 1121.689 kb on + strand, within pyrC at 1121.694 kb on + strand, within pyrC at 1121.793 kb on + strand at 1121.793 kb on + strand at 1122.106 kb on - strand, within yceB at 1122.106 kb on - strand, within yceB at 1122.256 kb on - strand, within yceB at 1122.315 kb on + strand, within yceB at 1122.325 kb on + strand, within yceB at 1122.356 kb on + strand, within yceB at 1122.356 kb on + strand, within yceB at 1122.501 kb on + strand at 1122.533 kb on + strand at 1122.546 kb on - strand at 1122.549 kb on - strand at 1122.556 kb on + strand at 1122.689 kb on + strand at 1122.829 kb on - strand, within grxB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,119,833 - +0.2 1,119,838 - +0.7 1,119,838 - +1.2 1,119,865 - -0.1 1,119,882 + +0.4 1,119,882 + +0.3 1,119,889 + -2.1 1,119,891 - -1.3 1,119,912 + +0.4 1,119,921 + -1.1 1,119,921 - -0.9 1,119,925 - +0.5 1,119,925 - -0.1 1,119,929 - -0.8 1,120,063 + yceP b1060 0.55 -0.3 1,120,100 + yceP b1060 0.69 -1.6 1,120,100 + yceP b1060 0.69 -0.4 1,120,120 + yceP b1060 0.77 -1.3 1,120,120 + yceP b1060 0.77 -0.9 1,120,120 + yceP b1060 0.77 -0.1 1,120,130 - yceP b1060 0.81 -0.1 1,120,134 + yceP b1060 0.82 -1.8 1,120,134 + yceP b1060 0.82 -0.8 1,120,135 - yceP b1060 0.83 -0.9 1,120,135 - +0.4 1,120,136 - yceP b1060 0.83 -0.7 1,120,136 - yceP b1060 0.83 +0.3 1,120,140 - yceP b1060 0.85 -2.3 1,120,143 - yceP b1060 0.86 -1.5 1,120,143 - yceP b1060 0.86 +0.8 1,120,158 - -1.7 1,120,176 + -2.4 1,120,176 + +0.5 1,120,216 - +1.7 1,120,269 - +0.5 1,120,276 - -0.3 1,120,346 - +0.1 1,120,539 - dinI b1061 0.30 -0.3 1,120,582 + dinI b1061 0.48 -0.8 1,120,631 - dinI b1061 0.67 -0.2 1,120,659 - dinI b1061 0.79 +0.1 1,120,670 - dinI b1061 0.83 -0.7 1,120,670 - dinI b1061 0.83 -1.1 1,120,852 - -0.8 1,120,868 + -2.1 1,120,917 + pyrC b1062 0.13 -2.5 1,120,985 - pyrC b1062 0.19 -3.0 1,120,985 - pyrC b1062 0.19 -3.3 1,121,019 + pyrC b1062 0.22 -3.8 1,121,059 + pyrC b1062 0.26 -0.9 1,121,073 - pyrC b1062 0.28 -2.9 1,121,073 - pyrC b1062 0.28 -4.1 1,121,123 + pyrC b1062 0.32 -4.3 1,121,123 + pyrC b1062 0.32 -3.1 1,121,174 - pyrC b1062 0.37 -2.5 1,121,174 - pyrC b1062 0.37 -1.9 1,121,195 - pyrC b1062 0.39 -1.9 1,121,205 - pyrC b1062 0.40 -2.3 1,121,205 - pyrC b1062 0.40 -3.1 1,121,210 + pyrC b1062 0.41 -1.4 1,121,427 - pyrC b1062 0.61 -1.1 1,121,456 + pyrC b1062 0.64 -1.4 1,121,495 + pyrC b1062 0.68 -1.4 1,121,574 - pyrC b1062 0.75 -1.4 1,121,574 - pyrC b1062 0.75 -2.4 1,121,636 + pyrC b1062 0.81 -2.0 1,121,641 + pyrC b1062 0.82 -3.0 1,121,668 + pyrC b1062 0.84 -1.9 1,121,668 + pyrC b1062 0.84 -1.4 1,121,689 + pyrC b1062 0.86 -3.1 1,121,689 + pyrC b1062 0.86 -3.0 1,121,694 + pyrC b1062 0.87 -2.4 1,121,793 + -0.6 1,121,793 + -1.2 1,122,106 - yceB b1063 0.30 -0.0 1,122,106 - yceB b1063 0.30 -0.9 1,122,256 - yceB b1063 0.57 -1.6 1,122,315 + yceB b1063 0.68 +0.4 1,122,325 + yceB b1063 0.69 +0.3 1,122,356 + yceB b1063 0.75 -0.3 1,122,356 + yceB b1063 0.75 +0.4 1,122,501 + +0.5 1,122,533 + -0.2 1,122,546 - +0.9 1,122,549 - +0.1 1,122,556 + +0.2 1,122,689 + +0.3 1,122,829 - grxB b1064 0.31 -0.1
Or see this region's nucleotide sequence