Strain Fitness in Escherichia coli BW25113 around b1062

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsolA and yceP are separated by 114 nucleotidesyceP and dinI are separated by 286 nucleotidesdinI and pyrC are separated by 73 nucleotidespyrC and yceB are separated by 105 nucleotidesyceB and grxB are separated by 133 nucleotides b1059: solA - N-methyltryptophan oxidase, FAD-binding (NCBI), at 1,118,691 to 1,119,809 solA b1060: yceP - orf, hypothetical protein (VIMSS), at 1,119,924 to 1,120,178 yceP b1061: dinI - DNA damage-inducible protein I (NCBI), at 1,120,465 to 1,120,710 dinI b1062: pyrC - dihydroorotase (NCBI), at 1,120,784 to 1,121,830 pyrC b1063: yceB - predicted lipoprotein (NCBI), at 1,121,936 to 1,122,496 yceB b1064: grxB - glutaredoxin 2 (Grx2) (NCBI), at 1,122,630 to 1,123,277 grxB Position (kb) 1120 1121 1122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1119.833 kb on - strandat 1119.838 kb on - strandat 1119.838 kb on - strandat 1119.865 kb on - strandat 1119.882 kb on + strandat 1119.882 kb on + strandat 1119.889 kb on + strandat 1119.891 kb on - strandat 1119.912 kb on + strandat 1119.921 kb on + strandat 1119.921 kb on - strandat 1119.925 kb on - strandat 1119.925 kb on - strandat 1119.929 kb on - strandat 1120.063 kb on + strand, within ycePat 1120.100 kb on + strand, within ycePat 1120.100 kb on + strand, within ycePat 1120.120 kb on + strand, within ycePat 1120.120 kb on + strand, within ycePat 1120.120 kb on + strand, within ycePat 1120.130 kb on - strand, within ycePat 1120.134 kb on + strand, within ycePat 1120.134 kb on + strand, within ycePat 1120.135 kb on - strand, within ycePat 1120.135 kb on - strandat 1120.136 kb on - strand, within ycePat 1120.136 kb on - strand, within ycePat 1120.140 kb on - strand, within ycePat 1120.143 kb on - strand, within ycePat 1120.143 kb on - strand, within ycePat 1120.158 kb on - strandat 1120.176 kb on + strandat 1120.176 kb on + strandat 1120.216 kb on - strandat 1120.269 kb on - strandat 1120.276 kb on - strandat 1120.346 kb on - strandat 1120.539 kb on - strand, within dinIat 1120.582 kb on + strand, within dinIat 1120.631 kb on - strand, within dinIat 1120.659 kb on - strand, within dinIat 1120.670 kb on - strand, within dinIat 1120.670 kb on - strand, within dinIat 1120.852 kb on - strandat 1120.868 kb on + strandat 1120.917 kb on + strand, within pyrCat 1120.985 kb on - strand, within pyrCat 1120.985 kb on - strand, within pyrCat 1121.019 kb on + strand, within pyrCat 1121.059 kb on + strand, within pyrCat 1121.073 kb on - strand, within pyrCat 1121.073 kb on - strand, within pyrCat 1121.123 kb on + strand, within pyrCat 1121.123 kb on + strand, within pyrCat 1121.174 kb on - strand, within pyrCat 1121.174 kb on - strand, within pyrCat 1121.195 kb on - strand, within pyrCat 1121.205 kb on - strand, within pyrCat 1121.205 kb on - strand, within pyrCat 1121.210 kb on + strand, within pyrCat 1121.427 kb on - strand, within pyrCat 1121.456 kb on + strand, within pyrCat 1121.495 kb on + strand, within pyrCat 1121.574 kb on - strand, within pyrCat 1121.574 kb on - strand, within pyrCat 1121.636 kb on + strand, within pyrCat 1121.641 kb on + strand, within pyrCat 1121.668 kb on + strand, within pyrCat 1121.668 kb on + strand, within pyrCat 1121.689 kb on + strand, within pyrCat 1121.689 kb on + strand, within pyrCat 1121.694 kb on + strand, within pyrCat 1121.793 kb on + strandat 1121.793 kb on + strandat 1122.106 kb on - strand, within yceBat 1122.106 kb on - strand, within yceBat 1122.256 kb on - strand, within yceBat 1122.315 kb on + strand, within yceBat 1122.325 kb on + strand, within yceBat 1122.356 kb on + strand, within yceBat 1122.356 kb on + strand, within yceBat 1122.501 kb on + strandat 1122.533 kb on + strandat 1122.546 kb on - strandat 1122.549 kb on - strandat 1122.556 kb on + strandat 1122.689 kb on + strandat 1122.829 kb on - strand, within grxB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,119,833 - +0.2
1,119,838 - +0.7
1,119,838 - +1.2
1,119,865 - -0.1
1,119,882 + +0.4
1,119,882 + +0.3
1,119,889 + -2.1
1,119,891 - -1.3
1,119,912 + +0.4
1,119,921 + -1.1
1,119,921 - -0.9
1,119,925 - +0.5
1,119,925 - -0.1
1,119,929 - -0.8
1,120,063 + yceP b1060 0.55 -0.3
1,120,100 + yceP b1060 0.69 -1.6
1,120,100 + yceP b1060 0.69 -0.4
1,120,120 + yceP b1060 0.77 -1.3
1,120,120 + yceP b1060 0.77 -0.9
1,120,120 + yceP b1060 0.77 -0.1
1,120,130 - yceP b1060 0.81 -0.1
1,120,134 + yceP b1060 0.82 -1.8
1,120,134 + yceP b1060 0.82 -0.8
1,120,135 - yceP b1060 0.83 -0.9
1,120,135 - +0.4
1,120,136 - yceP b1060 0.83 -0.7
1,120,136 - yceP b1060 0.83 +0.3
1,120,140 - yceP b1060 0.85 -2.3
1,120,143 - yceP b1060 0.86 -1.5
1,120,143 - yceP b1060 0.86 +0.8
1,120,158 - -1.7
1,120,176 + -2.4
1,120,176 + +0.5
1,120,216 - +1.7
1,120,269 - +0.5
1,120,276 - -0.3
1,120,346 - +0.1
1,120,539 - dinI b1061 0.30 -0.3
1,120,582 + dinI b1061 0.48 -0.8
1,120,631 - dinI b1061 0.67 -0.2
1,120,659 - dinI b1061 0.79 +0.1
1,120,670 - dinI b1061 0.83 -0.7
1,120,670 - dinI b1061 0.83 -1.1
1,120,852 - -0.8
1,120,868 + -2.1
1,120,917 + pyrC b1062 0.13 -2.5
1,120,985 - pyrC b1062 0.19 -3.0
1,120,985 - pyrC b1062 0.19 -3.3
1,121,019 + pyrC b1062 0.22 -3.8
1,121,059 + pyrC b1062 0.26 -0.9
1,121,073 - pyrC b1062 0.28 -2.9
1,121,073 - pyrC b1062 0.28 -4.1
1,121,123 + pyrC b1062 0.32 -4.3
1,121,123 + pyrC b1062 0.32 -3.1
1,121,174 - pyrC b1062 0.37 -2.5
1,121,174 - pyrC b1062 0.37 -1.9
1,121,195 - pyrC b1062 0.39 -1.9
1,121,205 - pyrC b1062 0.40 -2.3
1,121,205 - pyrC b1062 0.40 -3.1
1,121,210 + pyrC b1062 0.41 -1.4
1,121,427 - pyrC b1062 0.61 -1.1
1,121,456 + pyrC b1062 0.64 -1.4
1,121,495 + pyrC b1062 0.68 -1.4
1,121,574 - pyrC b1062 0.75 -1.4
1,121,574 - pyrC b1062 0.75 -2.4
1,121,636 + pyrC b1062 0.81 -2.0
1,121,641 + pyrC b1062 0.82 -3.0
1,121,668 + pyrC b1062 0.84 -1.9
1,121,668 + pyrC b1062 0.84 -1.4
1,121,689 + pyrC b1062 0.86 -3.1
1,121,689 + pyrC b1062 0.86 -3.0
1,121,694 + pyrC b1062 0.87 -2.4
1,121,793 + -0.6
1,121,793 + -1.2
1,122,106 - yceB b1063 0.30 -0.0
1,122,106 - yceB b1063 0.30 -0.9
1,122,256 - yceB b1063 0.57 -1.6
1,122,315 + yceB b1063 0.68 +0.4
1,122,325 + yceB b1063 0.69 +0.3
1,122,356 + yceB b1063 0.75 -0.3
1,122,356 + yceB b1063 0.75 +0.4
1,122,501 + +0.5
1,122,533 + -0.2
1,122,546 - +0.9
1,122,549 - +0.1
1,122,556 + +0.2
1,122,689 + +0.3
1,122,829 - grxB b1064 0.31 -0.1

Or see this region's nucleotide sequence