Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycaP and serC are separated by 198 nucleotides serC and aroA are separated by 70 nucleotides
b0906: ycaP - conserved inner membrane protein (NCBI), at 955,985 to 956,677
ycaP
b0907: serC - phosphoserine aminotransferase (NCBI), at 956,876 to 957,964
serC
b0908: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI), at 958,035 to 959,318
aroA
Position (kb) 956
957
958 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 955.952 kb on - strand at 955.952 kb on - strand at 956.020 kb on - strand at 956.051 kb on + strand at 956.051 kb on + strand at 956.063 kb on + strand, within ycaP at 956.070 kb on + strand, within ycaP at 956.078 kb on - strand, within ycaP at 956.123 kb on - strand, within ycaP at 956.151 kb on + strand, within ycaP at 956.151 kb on + strand, within ycaP at 956.185 kb on + strand, within ycaP at 956.250 kb on - strand, within ycaP at 956.253 kb on + strand, within ycaP at 956.253 kb on + strand, within ycaP at 956.260 kb on - strand, within ycaP at 956.260 kb on - strand, within ycaP at 956.390 kb on - strand, within ycaP at 956.391 kb on + strand, within ycaP at 956.391 kb on + strand, within ycaP at 956.453 kb on + strand, within ycaP at 956.523 kb on + strand, within ycaP at 956.523 kb on + strand, within ycaP at 956.532 kb on + strand, within ycaP at 956.532 kb on + strand, within ycaP at 956.772 kb on + strand at 956.774 kb on + strand at 956.774 kb on + strand at 956.917 kb on + strand at 956.951 kb on - strand at 956.967 kb on + strand at 956.967 kb on + strand at 957.064 kb on + strand, within serC at 957.257 kb on - strand, within serC at 957.265 kb on + strand, within serC at 957.265 kb on + strand, within serC at 957.405 kb on + strand, within serC at 957.504 kb on + strand, within serC at 957.526 kb on + strand, within serC at 957.579 kb on + strand, within serC at 957.594 kb on - strand, within serC at 957.700 kb on + strand, within serC at 957.700 kb on + strand, within serC at 957.855 kb on + strand, within serC at 957.855 kb on + strand, within serC at 957.912 kb on + strand at 957.912 kb on + strand at 957.920 kb on - strand at 958.024 kb on - strand at 958.027 kb on - strand at 958.064 kb on - strand at 958.179 kb on + strand, within aroA at 958.222 kb on + strand, within aroA at 958.275 kb on + strand, within aroA at 958.283 kb on - strand, within aroA at 958.293 kb on + strand, within aroA at 958.301 kb on - strand, within aroA at 958.353 kb on + strand, within aroA at 958.403 kb on - strand, within aroA at 958.422 kb on - strand, within aroA at 958.437 kb on - strand, within aroA at 958.501 kb on + strand, within aroA at 958.531 kb on - strand, within aroA at 958.531 kb on - strand, within aroA at 958.552 kb on + strand, within aroA at 958.552 kb on + strand, within aroA at 958.721 kb on + strand, within aroA at 958.728 kb on - strand, within aroA at 958.730 kb on - strand, within aroA at 958.738 kb on - strand, within aroA at 958.738 kb on - strand, within aroA at 958.794 kb on + strand, within aroA at 958.794 kb on + strand, within aroA at 958.810 kb on + strand, within aroA at 958.810 kb on + strand, within aroA at 958.825 kb on + strand, within aroA at 958.833 kb on - strand, within aroA at 958.833 kb on - strand, within aroA at 958.922 kb on - strand, within aroA at 958.922 kb on - strand, within aroA at 958.932 kb on + strand, within aroA at 958.932 kb on + strand, within aroA at 958.934 kb on + strand, within aroA at 958.942 kb on - strand, within aroA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 955,952 - -0.3 955,952 - -0.2 956,020 - +0.2 956,051 + +0.2 956,051 + -0.6 956,063 + ycaP b0906 0.11 -2.6 956,070 + ycaP b0906 0.12 +0.4 956,078 - ycaP b0906 0.13 -0.3 956,123 - ycaP b0906 0.20 -0.1 956,151 + ycaP b0906 0.24 +1.1 956,151 + ycaP b0906 0.24 +0.5 956,185 + ycaP b0906 0.29 +0.5 956,250 - ycaP b0906 0.38 -0.6 956,253 + ycaP b0906 0.39 +0.1 956,253 + ycaP b0906 0.39 -0.6 956,260 - ycaP b0906 0.40 +0.9 956,260 - ycaP b0906 0.40 +1.7 956,390 - ycaP b0906 0.58 -0.7 956,391 + ycaP b0906 0.59 -1.1 956,391 + ycaP b0906 0.59 -0.2 956,453 + ycaP b0906 0.68 +0.4 956,523 + ycaP b0906 0.78 +0.3 956,523 + ycaP b0906 0.78 -0.9 956,532 + ycaP b0906 0.79 -0.4 956,532 + ycaP b0906 0.79 +0.4 956,772 + +0.8 956,774 + -0.1 956,774 + -0.1 956,917 + -3.6 956,951 - -4.8 956,967 + -3.4 956,967 + -4.5 957,064 + serC b0907 0.17 -3.2 957,257 - serC b0907 0.35 -5.2 957,265 + serC b0907 0.36 -2.1 957,265 + serC b0907 0.36 -3.9 957,405 + serC b0907 0.49 -2.8 957,504 + serC b0907 0.58 -2.2 957,526 + serC b0907 0.60 -4.2 957,579 + serC b0907 0.65 -3.0 957,594 - serC b0907 0.66 -4.4 957,700 + serC b0907 0.76 -2.6 957,700 + serC b0907 0.76 -2.1 957,855 + serC b0907 0.90 -3.6 957,855 + serC b0907 0.90 -3.7 957,912 + -3.5 957,912 + -1.7 957,920 - -4.2 958,024 - -3.1 958,027 - -3.2 958,064 - -3.3 958,179 + aroA b0908 0.11 -1.9 958,222 + aroA b0908 0.15 -3.7 958,275 + aroA b0908 0.19 -1.2 958,283 - aroA b0908 0.19 -3.3 958,293 + aroA b0908 0.20 -2.7 958,301 - aroA b0908 0.21 -1.2 958,353 + aroA b0908 0.25 +0.4 958,403 - aroA b0908 0.29 -4.2 958,422 - aroA b0908 0.30 -3.8 958,437 - aroA b0908 0.31 -3.8 958,501 + aroA b0908 0.36 -2.4 958,531 - aroA b0908 0.39 -4.3 958,531 - aroA b0908 0.39 -3.2 958,552 + aroA b0908 0.40 -2.1 958,552 + aroA b0908 0.40 -0.9 958,721 + aroA b0908 0.53 -1.4 958,728 - aroA b0908 0.54 -2.5 958,730 - aroA b0908 0.54 -2.5 958,738 - aroA b0908 0.55 -3.1 958,738 - aroA b0908 0.55 -0.9 958,794 + aroA b0908 0.59 -2.8 958,794 + aroA b0908 0.59 -2.2 958,810 + aroA b0908 0.60 -1.9 958,810 + aroA b0908 0.60 -1.7 958,825 + aroA b0908 0.62 -2.5 958,833 - aroA b0908 0.62 -4.0 958,833 - aroA b0908 0.62 -3.5 958,922 - aroA b0908 0.69 -2.0 958,922 - aroA b0908 0.69 -2.5 958,932 + aroA b0908 0.70 -2.3 958,932 + aroA b0908 0.70 -1.4 958,934 + aroA b0908 0.70 -1.9 958,942 - aroA b0908 0.71 -2.8
Or see this region's nucleotide sequence