Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modC and ybhA are separated by 0 nucleotides ybhA and ybhE are separated by 154 nucleotides ybhE and ybhD are separated by 40 nucleotides
b0765: modC - molybdate transporter subunit (NCBI), at 795,777 to 796,835
modC
b0766: ybhA - predicted hydrolase (NCBI), at 796,836 to 797,654
ybhA
b0767: ybhE - 6-phosphogluconolactonase (NCBI), at 797,809 to 798,804
ybhE
b0768: ybhD - predicted DNA-binding transcriptional regulator (RefSeq), at 798,845 to 799,798
ybhD
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.862 kb on + strand at 797.012 kb on - strand, within ybhA at 797.022 kb on - strand, within ybhA at 797.100 kb on - strand, within ybhA at 797.122 kb on - strand, within ybhA at 797.289 kb on + strand, within ybhA at 797.318 kb on - strand, within ybhA at 797.334 kb on + strand, within ybhA at 797.334 kb on + strand at 797.380 kb on - strand, within ybhA at 797.565 kb on + strand, within ybhA at 797.565 kb on + strand, within ybhA at 797.592 kb on - strand at 797.615 kb on - strand at 797.615 kb on - strand at 797.702 kb on + strand at 797.702 kb on + strand at 797.775 kb on + strand at 797.960 kb on + strand, within ybhE at 798.019 kb on + strand, within ybhE at 798.080 kb on + strand, within ybhE at 798.105 kb on - strand, within ybhE at 798.134 kb on - strand at 798.207 kb on + strand, within ybhE at 798.207 kb on + strand, within ybhE at 798.414 kb on - strand, within ybhE at 798.414 kb on - strand, within ybhE at 798.502 kb on + strand, within ybhE at 798.510 kb on - strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.533 kb on + strand, within ybhE at 798.660 kb on - strand at 798.736 kb on - strand at 798.860 kb on - strand at 798.860 kb on - strand at 799.113 kb on - strand, within ybhD at 799.113 kb on - strand, within ybhD at 799.171 kb on + strand, within ybhD at 799.191 kb on + strand, within ybhD at 799.191 kb on + strand, within ybhD at 799.297 kb on - strand, within ybhD at 799.301 kb on - strand, within ybhD at 799.301 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.315 kb on + strand, within ybhD at 799.323 kb on - strand, within ybhD at 799.362 kb on - strand, within ybhD at 799.384 kb on + strand, within ybhD at 799.435 kb on + strand, within ybhD at 799.437 kb on + strand, within ybhD at 799.442 kb on - strand, within ybhD at 799.652 kb on + strand, within ybhD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 796,862 + -0.5 797,012 - ybhA b0766 0.21 -0.8 797,022 - ybhA b0766 0.23 -0.4 797,100 - ybhA b0766 0.32 +1.2 797,122 - ybhA b0766 0.35 -3.0 797,289 + ybhA b0766 0.55 +0.6 797,318 - ybhA b0766 0.59 +0.9 797,334 + ybhA b0766 0.61 +0.0 797,334 + +0.9 797,380 - ybhA b0766 0.66 -0.1 797,565 + ybhA b0766 0.89 -0.2 797,565 + ybhA b0766 0.89 -0.9 797,592 - +0.5 797,615 - -0.0 797,615 - -0.9 797,702 + +0.2 797,702 + -0.0 797,775 + -0.2 797,960 + ybhE b0767 0.15 -2.4 798,019 + ybhE b0767 0.21 +0.9 798,080 + ybhE b0767 0.27 -0.4 798,105 - ybhE b0767 0.30 -1.0 798,134 - -0.5 798,207 + ybhE b0767 0.40 -0.3 798,207 + ybhE b0767 0.40 +0.0 798,414 - ybhE b0767 0.61 -1.8 798,414 - ybhE b0767 0.61 +0.1 798,502 + ybhE b0767 0.70 -1.2 798,510 - ybhE b0767 0.70 -1.7 798,533 + ybhE b0767 0.73 -0.7 798,533 + ybhE b0767 0.73 -1.0 798,533 + ybhE b0767 0.73 -0.5 798,660 - -0.1 798,736 - -0.1 798,860 - -0.7 798,860 - +0.4 799,113 - ybhD b0768 0.28 +0.0 799,113 - ybhD b0768 0.28 -0.5 799,171 + ybhD b0768 0.34 -0.8 799,191 + ybhD b0768 0.36 +0.4 799,191 + ybhD b0768 0.36 -0.1 799,297 - ybhD b0768 0.47 -0.9 799,301 - ybhD b0768 0.48 -0.4 799,301 - ybhD b0768 0.48 +2.5 799,313 - ybhD b0768 0.49 -0.6 799,313 - ybhD b0768 0.49 +0.4 799,313 - ybhD b0768 0.49 -0.3 799,315 + ybhD b0768 0.49 +0.1 799,323 - ybhD b0768 0.50 -0.1 799,362 - ybhD b0768 0.54 +0.5 799,384 + ybhD b0768 0.56 -0.6 799,435 + ybhD b0768 0.62 +0.3 799,437 + ybhD b0768 0.62 -2.7 799,442 - ybhD b0768 0.63 +0.3 799,652 + ybhD b0768 0.85 -0.2
Or see this region's nucleotide sequence